$ vmatch -l 250 -e 6 -q U89959 -s xml -showdesc 0 atEST 
<?xml version="1.0"?>
<!DOCTYPE Vmatchoutput PUBLIC "-//VMATCH//VMATCH Vmatchoutput/EN" "Vmatchoutput.dtd
<Vmatchoutput>
  <Vmatchglobalparams>
    <Vmatchversion>1.0</Vmatchversion>
    <Vmatchindex>atEST</Vmatchindex>
    <Vmatchquery>U89959</Vmatchquery>
    <Vmatchnumofdbseq>1952</Vmatchnumofdbseq>
    <Vmatchdatabaselength>772375</Vmatchdatabaselength>
    <Vmatchnumofqueryseq>1</Vmatchnumofqueryseq>
    <Vmatchquerylength>106972</Vmatchquerylength>
    <Vmatchalphabet>
      <Vmatchalphabetdomainsize>32</Vmatchalphabetdomainsize>
      <Vmatchalphabetmapsize>5</Vmatchalphabetmapsize>
      <Vmatchalphabetmappedwildcards>22</Vmatchalphabetmappedwildcards>
      <Vmatchalphabetundefsymbol>253</Vmatchalphabetundefsymbol>
      <Vmatchalphabetdomain>aAcCgGtTuUnsywrkvbdhmNSYWRKVBDHM</Vmatchalphabetdomain>
      <Vmatchalphabetverbosechar>acgtn</Vmatchalphabetverbosechar>
    </Vmatchalphabet>
  </Vmatchglobalparams>
  <Vmatchiterationmatches>
    <Match>
      <Vmatchmatchidnumber>0</Vmatchmatchidnumber>
      <Vmatchlength1>270</Vmatchlength1>
      <Vmatchseqnum1>1265</Vmatchseqnum1>
      <Vmatchdescription1>gi|3449674|gb|AI099935.1|AI099935</Vmatchdescription1>
      <Vmatchrelpos1>63</Vmatchrelpos1>
      <Vmatchflag>D</Vmatchflag>
      <Vmatchlength2>269</Vmatchlength2>
      <Vmatchseqnum2>0</Vmatchseqnum2>
      <Vmatchdescription2>Arabidopsis</Vmatchdescription2>
      <Vmatchrelpos1>63</Vmatchrelpos1>
      <Vmatchrelpos2>72484</Vmatchrelpos2>
      <Vmatchdistance>6</Vmatchdistance>
      <Vmatchevalue>1.81e-135</Vmatchevalue>
      <Vmatchscore>521</Vmatchscore>
      <Vmatchidentity>97.78</Vmatchidentity>
      <DNA_eops>
        <DNA_eop_type>match</DNA_eop_type>
        <DNA_eop_length>11</DNA_eop_length>
        <DNA_eop_type>deletion</DNA_eop_type>
        <DNA_eop_length>1</DNA_eop_length>
        <DNA_eop_type>match</DNA_eop_type>
        <DNA_eop_length>12</DNA_eop_length>
        <DNA_eop_type>mismatch</DNA_eop_type>
        <DNA_eop_length>3</DNA_eop_length>
        <DNA_eop_type>match</DNA_eop_type>
        <DNA_eop_length>9</DNA_eop_length>
        <DNA_eop_type>mismatch</DNA_eop_type>
        <DNA_eop_length>1</DNA_eop_length>
        <DNA_eop_type>match</DNA_eop_type>
        <DNA_eop_length>17</DNA_eop_length>
        <DNA_eop_type>mismatch</DNA_eop_type>
        <DNA_eop_length>1</DNA_eop_length>
        <DNA_eop_type>match</DNA_eop_type>
        <DNA_eop_length>215</DNA_eop_length>
      </DNA_eops>
    </Match>
  </Vmatchiterationmatches>
</Vmatchoutput>
