$ uniquesub -output subjectpos querypos sequence indexname-bothstrands.rcm queryfile.fna
# reading file "queryfile.fna"
unit 0 (sequence 1): minimum unique length is 3
0 -15 25 tca
0 +34 31 gac
0 -44 37 tcg
0 -13 61 ttt
0 -13 62 ttt
0 -13 63 ttt
0 -13 74 ttt
0 -13 75 ttt
0 +54 82 aaa
0 -13 96 ttt
0 -13 110 ttt
0 -13 111 ttt
0 -13 112 ttt
0 -13 113 ttt
0 -13 114 ttt
unit 1 (sequence 2): minimum unique length is 3
0 -13 4 ttt
0 -13 5 ttt
0 +54 12 aaa
0 -13 26 ttt
0 -13 40 ttt
0 -13 41 ttt
0 -13 42 ttt
0 -13 43 ttt
0 -13 44 ttt
# overall space peak: main=0.06 MB, secondary=0.00 MB
