$ mkrcidx -v -db indexfile.fna -indexname indexname-bothstrands
reading file "indexfile.fna"
total length of sequences: 70
for this input size and alphabet size, the maximal prefixlength
(argument of option -pl) is 3,
the recommended prefixlength is 2
total length of sequences: 141 (including 1 separator)
alphabet "aAcCgGtTuUnsywrkvbdhmNSYWRKVBDHM" (size 32) mapped to "acgtn" (size 5)
remove file "indexname-bothstrands.rcm.tis"
remove file "indexname-bothstrands.rcm.bwt"
remove file "indexname-bothstrands.rcm.suf"
remove file "indexname-bothstrands.rcm.lcp"
remove file "indexname-bothstrands.rcm.des"
remove file "indexname-bothstrands.rcm.ssp"
remove file "indexname-bothstrands.rcm.sds"
remove file "indexname-bothstrands.rcm.llv"
remove file "indexname-bothstrands.rcm.al1"
remove file "indexname-bothstrands.rcm.prj"
create file "indexname-bothstrands.rcm.tis"
create file "indexname-bothstrands.rcm.des"
create file "indexname-bothstrands.rcm.sds"
create file "indexname-bothstrands.rcm.lcp"
initializing data structures
sorting suffixes according to prefix of length 2
sorting all buckets
create file "indexname-bothstrands.rcm.llv"
create file "indexname-bothstrands.rcm.suf"
create file "indexname-bothstrands.rcm.bwt"
create file "indexname-bothstrands.rcm.prj"
create file "indexname-bothstrands.rcm.al1"
# overall space peak: main=0.13 MB,  secondary=0.00 MB
