\documentclass[12pt]{article}

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\author{Stefan Kurtz\thanks{\SKaffiliation}}
\title{\begin{tabular}{c}
\textbf{A Software Tool to efficiently detect}\\
\textbf{Motifs in Large Sequence Sets}\\
\textbf{Manual}
\end{tabular}}
\makeindex
\begin{document}
\maketitle

\begin{Showprogramwithoptions}{\VMOT}{}

\input{vmotif.opt}

\end{Showprogramwithoptions}
\end{document}
