\documentclass[12pt]{article}
\usepackage{a4wide}
\title{Flexible Visualization of Vmatch Output using CGviz}
\author{Stefan Kurtz}
\date{\today}
\begin{document}
\maketitle
\begin{enumerate}
\item
Transform Vmatch output into a format, accepted by CGviz
\item
explore different represenation of displaying matches: dotplot and matchgraph
\item
integrate additonal information into the match graph:
color coded length, color coded direction
\item
integrate supplementary information into the graph, e.g.\ predicted 
genes
\item
steps
\begin{itemize}
\item
start with existing cgv files (including given data sets) to explore the
different modes of visualization
\item
change the data
\item
modify the glyphs
\item
integrate transformators
\item
modify panes
\item
modify windows
\item
write scripts to generate a cgv file for a given Vmatch run
consisting of input sequences and matches
\item
produce documentation
\end{itemize}
\end{enumerate}
\end{document}
