Package picard.analysis.artifacts
Class ErrorSummaryMetrics
java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.analysis.MergeableMetricBase
picard.analysis.artifacts.ErrorSummaryMetrics
@DocumentedFeature(groupName="Metrics",
summary="Metrics")
public class ErrorSummaryMetrics
extends MergeableMetricBase
Summary metrics produced by
CollectSequencingArtifactMetrics as a roll up of the
context-specific error rates, to provide global error rates per type of base substitution.
Errors are normalized to the lexically lower reference base and summarized together. E.g.
G>T is converted to C>A and merged with data from C>A for reporting.-
Nested Class Summary
Nested classes/interfaces inherited from class picard.analysis.MergeableMetricBase
MergeableMetricBase.MergeByAdding, MergeableMetricBase.MergeByAssertEquals, MergeableMetricBase.MergingIsManual, MergeableMetricBase.NoMergingIsDerived, MergeableMetricBase.NoMergingKeepsValue -
Field Summary
FieldsModifier and TypeFieldDescriptioncharThe alternative base (or it's complement).longThe number of alt bases observed.charThe reference base (or it's complement).longThe number of reference bases observed.A single string representing the substition from REF_BASE to ALT_BASE for convenience.doubleThe rate of the substitution in question. -
Constructor Summary
Constructors -
Method Summary