FSL_TYPE

FSL data format type codes. More...

Classes
struct	FSLIO
	High level data structure for open datasets in the fslio API. More...

Macros
#define	FSL_TYPE_ANALYZE   0
#define	FSL_TYPE_NIFTI   1
#define	FSL_TYPE_NIFTI_PAIR   2
#define	FSL_TYPE_MINC   4
#define	FSL_TYPE_ANALYZE_GZ   100
#define	FSL_TYPE_NIFTI_GZ   101
#define	FSL_TYPE_NIFTI_PAIR_GZ   102
#define	FSL_TYPE_MINC_GZ   104
#define	FSL_RADIOLOGICAL   -1
#define	FSL_NEUROLOGICAL   1

Typedefs
typedef unsigned char	THIS_UINT8
typedef char	THIS_INT8
typedef unsigned short	THIS_UINT16
typedef short	THIS_INT16
typedef unsigned int	THIS_UINT32
typedef int	THIS_INT32
typedef unsigned long	THIS_UINT64
typedef long	THIS_INT64
typedef float	THIS_FLOAT32
typedef double	THIS_FLOAT64

Functions
FSLIO *	FslOpen (const char *filename, const char *opts)
	Opens a file for either reading or writing. More...
FSLIO *	FslXOpen (const char *filename, const char *opts, int filetype)
	Opens a file for either reading or writing. More...
int	FslSeekVolume (FSLIO *fslio, size_t vols)
int	FslClose (FSLIO *fslio)
	Write header and image data if this dataset was open for writing. Close the dataset header and data files. More...
void *	FslReadAllVolumes (FSLIO *fslio, char *filename)
	Read the header and all data into the FSLIO structure. More...
void	FslWriteAllVolumes (FSLIO *fslio, const void *buffer)
	Writes all data from buffer (using size info from fslio) to file. More...
size_t	FslReadVolumes (FSLIO *fslio, void *buffer, size_t nvols)
	Read the first nvols Volumes from a 4D dataset. More...
size_t	FslWriteVolumes (FSLIO *fslio, const void *buffer, size_t nvols)
	Write the first nvols volumes in buffer to disk. More...
void	FslWriteHeader (FSLIO *fslio)
	Writes nifti/anz header and opens img file ready for writing. More...
int	FslFileExists (const char *filename)
char *	FslMakeBaseName (const char *fname)
int	FslCheckForMultipleFileNames (const char *filename)
int	FslGetEnvOutputType (void)
void	FslSetIgnoreMFQ (int flag)
int	FslGetIgnoreMFQ (void)
void	FslSetOverrideOutputType (int type)
int	FslGetOverrideOutputType (void)
int	FslGetFileType (const FSLIO *fslio)
void	FslSetFileType (FSLIO *fslio, int filetype)
int	FslIsSingleFileType (int filetype)
int	FslIsCompressedFileType (int filetype)
int	FslBaseFileType (int filetype)
const char *	FslFileTypeString (int filetype)
	Return a string describing the format of the dataset. More...
int	FslGetWriteMode (const FSLIO *fslio)
void	FslSetWriteMode (FSLIO *fslio, int mode)
void	AvwSwapHeader (struct dsr *avw)
int	FslReadRawHeader (void *buffer, const char *filename)
FSLIO *	FslInit (void)
	allocate space for the FSLIO struct and set some sensible defaults More...
void	FslInitHeader (FSLIO *fslio, short t, size_t x, size_t y, size_t z, size_t v, float vx, float vy, float vz, float tr, size_t dim)
void	FslSetInit (FSLIO *fslio)
void	FslCloneHeader (FSLIO *dest, const FSLIO *src)
size_t	FslGetVolSize (FSLIO *fslio)