/*
 * Copyright (C) 2009-2010 Institute for Computational Biomedicine,
 *                    Weill Medical College of Cornell University
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.campagnelab.goby.algorithmic.data;

/**
 * @author Fabien Campagne
 *         Date: May 16, 2010
 *         Time: 12:35:01 PM
 */
public class ReadWithIndex extends Read {
    public int readIndex;

    /**
     * @param start     Start position of the alignment entry.
     * @param end       End position of the alignment entry on the reference sequence.
     * @param readIndex index of the read (from the compact file, uniquely identfies a read).
     */
    public ReadWithIndex(final int start, final int end, final int readIndex) {
        super(start, end);
        this.readIndex = readIndex;
    }

}
