
= Table of Contents =

__TOC__

= Introduction =

The purpose of '''Trace Compass''' is to facilitate the integration of tracing
and monitoring tools into Eclipse, to provide out-of-the-box generic
functionalities/views and provide extension mechanisms of the base
functionalities for application specific purposes.

This guide goes over the internal components of the Trace Compass framework. It
should help developers trying to add new capabilities (support for new trace
type, new analysis or views, etc.) to the framework. End-users, using the RCP
for example, should not have to worry about the concepts explained here.

= Implementing a New Trace Type =

The framework can easily be extended to support more trace types. To make a new
trace type, one must define the following items:

* The event type
* The trace type
* The trace context
* The trace location
* The ''org.eclipse.linuxtools.tmf.core.tracetype'' plug-in extension point
* (Optional) The ''org.eclipse.linuxtools.tmf.ui.tracetypeui'' plug-in extension point

The '''event type''' must implement an ''ITmfEvent'' or extend a class that
implements an ''ITmfEvent''. Typically it will extend ''TmfEvent''. The event
type must contain all the data of an event.

The '''trace type''' must be of an ''ITmfTrace'' type. The ''TmfTrace'' class
will supply many background operations so that the reader only needs to
implement certain functions. This includes the ''event aspects'' for events of
this trace type. See the section below.

The '''trace context''' can be seen as the internals of an iterator. It is
required by the trace reader to parse events as it iterates the trace and to
keep track of its rank and location. It can have a timestamp, a rank, a file
position, or any other element, it should be considered to be ephemeral.

The '''trace location''' is an element that is cloned often to store
checkpoints, it is generally persistent. It is used to rebuild a context,
therefore, it needs to contain enough information to unambiguously point to one
and only one event. Finally the ''tracetype'' plug-in extension associates a
given trace, non-programmatically to a trace type for use in the UI.

== Event Aspects ==

In Trace Compass, an ''event aspect'' represents any type of information that
can be extracted from a trace event. The simple case is information that is
present directly in the event. For example, the timestamp of an event, a field
of an LTTng event, or the "payload" that is on the same line of a text trace
entry. But it could also be the result of an indirect operation, for example a
state system query at the timestamp of the given event (see the section
[[#Generic State System]]).

All aspects should implement the '''ITmfEventAspect''' interface. The important
method in there is ''resolve(ITmfEvent)'', which tells this aspect what to
output for a given event. The singleton pattern fits well for pre-defined aspect
classes, in general.

The aspects defined for a trace type determine the initial columns in the Event
Table, as well as the elements on which the trace can be filtered, among other
things.

=== Base and custom aspects ===

Some base aspects are defined in '''TmfTrace#BASE_ASPECTS'''. They use generic
methods found in '''ITmfEvent''', so they should be applicable for any event
type defined in the framework. If one does not override
'''TmfTrace#getEventAspects''', then only the base aspects will be used with
this trace.

Overriding the method does not append to this list, it replaces it. So if you
wish to define additional aspects for a new trace type, do not forget to include
the BASE_ASPECTS you want to use, if any, within the list.

The order of the elements in the returned ''Iterable'' may matter to other
components. For instance, the initial ordering of the columns in the Events
Table will match it.

Defining additional aspects allows to expose more data from the trace events
without having to update all the views using the aspects API.

=== Creating event aspects programmatically ===

Another advantage of event aspects is that they can be created programmatically,
without having to modify the base trace or event classes. A new analysis
applying to a pre-existing trace type may wish to define additional aspects to
make its job easier.

While the notion of event aspects should not be exposed to users directly, it is
possible to create new aspects based on user input. For example, an "event
field" dialog could ask the user to enter a field name, which would then create
an aspect that would look for the value of a field with this name in every
event. The user could then be able to display or filter on this aspect.

== Optional Trace Type Attributes ==

After defining the trace type as described in the previous chapters it is
possible to define optional attributes for the trace type.

=== Default Editor ===

The '''defaultEditor''' attribute of the '''org.eclipse.linuxtools.tmf.ui.tracetypeui'''
extension point allows for configuring the editor to use for displaying the
events. If omitted, the ''TmfEventsEditor'' is used as default.

To configure an editor, first add the '''defaultEditor''' attribute to the trace
type in the extension definition. This can be done by selecting the trace type
in the plug-in manifest editor. Then click the right mouse button and select
'''New -> defaultEditor''' in the context sensitive menu. Then select the newly
added attribute. Now you can specify the editor id to use on the right side of
the manifest editor. For example, this attribute could be used to implement an
extension of the class ''org.eclipse.ui.part.MultiPageEditor''. The first page
could use the ''TmfEventsEditor''' to display the events in a table as usual and
other pages can display other aspects of the trace.

=== Events Table Type ===

The  '''eventsTableType''' attribute of the '''org.eclipse.linuxtools.tmf.ui.tracetypeui'''
extension point allows for configuring the events table class to use in the
default events editor. If omitted, the default events table will be used.

To configure a trace type specific events table, first add the
'''eventsTableType''' attribute to the trace type in the extension definition.
This can be done by selecting the trace type in the plug-in manifest editor.
Then click the right mouse button and select '''New -> eventsTableType''' in the
context sensitive menu. Then select the newly added attribute and click on
''class'' on the right side of the manifest editor. The new class wizard will
open. The ''superclass'' field will be already filled with the class ''org.eclipse.tracecompass.tmf.ui.viewers.events.TmfEventsTable''.

By using this attribute, a table with different columns than the default columns
can be defined. See the class
''org.eclipse.tracecompass.internal.gdbtrace.ui.views.events.GdbEventsTable''
for an example implementation.

=== Perspective ===

The  '''perspective''' element of the '''org.eclipse.linuxtools.tmf.ui.tracetypeui'''
extension point allows for configuring the default perspective associated with a
trace type. If omitted, the current perspective will be used.

To configure an associated perspective, first add the
'''perspective''' element to the trace type in the extension definition.
This can be done by selecting the trace type in the plug-in manifest editor.
Then click the right mouse button and select '''New -> perspective''' in the
context sensitive menu. Then select the newly added element and select the
''id'' text field on the right side of the manifest editor. Enter the associated
perspective id, which can be found in the '''org.eclipse.ui.perspectives'''
extension that defines the perspective.

By using this element, the workbench will switch to the associated perspective
when a trace of this trace type is opened. This behavior can be controlled by a
user dialog or preference.

== Other Considerations ==

Other views and components may provide additional features that are active only
when the event or trace type class implements certain additional interfaces.

=== Collapsing of repetitive events ===

By implementing the interface
''org.eclipse.tracecompass.tmf.core.event.collapse.ITmfCollapsibleEvent'' the
event table will allow to collapse repetitive events by selecting the menu item
'''Collapse Events''' after pressing the right mouse button in the table.

== Best Practices ==

* Do not load the whole trace in RAM, it will limit the size of the trace that can be read.
* Reuse as much code as possible, it makes the trace format much easier to maintain.
* Use Eclipse's editor instead of editing the XML directly.
* Do not forget Java supports only signed data types, there may be special care needed to handle unsigned data.
* If the support for your trace has custom UI elements (like icons, views, etc.), split the core and UI parts in separate plugins, named identically except for a ''.core'' or ''.ui'' suffix.
** Implement the ''tmf.core.tracetype'' extension in the core plugin, and the ''tmf.ui.tracetypeui'' extension in the UI plugin if applicable.

== An Example: Nexus-lite parser ==

=== Description of the file ===

This is a very small subset of the nexus trace format, with some changes to make
it easier to read. There is one file. This file starts with 64 Strings
containing the event names, then an arbitrarily large number of events. The
events are each 64 bits long. the first 32 are the timestamp in microseconds,
the second 32 are split into 6 bits for the event type, and 26 for the data
payload.

The trace type will be made of two parts, part 1 is the event description, it is
just 64 strings, comma separated and then a line feed.

<pre>
Startup,Stop,Load,Add, ... ,reserved\n
</pre>

Then there will be the events in this format

{| width= "85%"
|style="width: 50%; background-color: #ffffcc;"|timestamp (32 bits)
|style="width: 10%; background-color: #ffccff;"|type (6 bits)
|style="width: 40%; background-color: #ccffcc;"|payload (26 bits)
|-
|style="background-color: #ffcccc;" colspan="3"|64 bits total
|}

all events will be the same size (64 bits).

=== NexusLite Plug-in ===

Create a '''New''', '''Project...''', '''Plug-in Project''', set the title to
'''com.example.nexuslite''', click '''Next >''' then click on '''Finish'''.

Now the structure for the Nexus trace Plug-in is set up.

Add a dependency to TMF core and UI by opening the '''MANIFEST.MF''' in
'''META-INF''', selecting the '''Dependencies''' tab and '''Add ...'''
'''org.eclipse.tracecompass.tmf.core''' and '''org.eclipse.tracecompass.tmf.ui'''.

[[Image:images/NTTAddDepend.png]]<br>
[[Image:images/NTTSelectProjects.png]]<br>

Now the project can access TMF classes.

=== Trace Event ===

The '''TmfEvent''' class will work for this example. No code required.

=== Trace Reader ===

The trace reader will extend a '''TmfTrace''' class.

It will need to implement:

* validate (is the trace format valid?)

* initTrace (called as the trace is opened)

* seekEvent (go to a position in the trace and create a context)

* getNext (implemented in the base class)

* parseEvent (read the next element in the trace)

For reference, there is an example implementation of the Nexus Trace file in
org.eclipse.tracecompass.tracing.examples.core.trace.nexus.NexusTrace.java.

In this example, the '''validate''' function first checks if the file
exists, then makes sure that it is really a file, and not a directory. Then we
attempt to read the file header, to make sure that it is really a Nexus Trace.
If that check passes, we return a TraceValidationStatus with a confidence of 20.

Typically, TraceValidationStatus confidences should range from 1 to 100. 1 meaning
"there is a very small chance that this trace is of this type", and 100 meaning
"it is this type for sure, and cannot be anything else". At run-time, the
auto-detection will pick the type which returned the highest confidence. So
checks of the type "does the file exist?" should not return a too high
confidence. If confidence 0 is returned the auto-detection won't pick this type.

Here we used a confidence of 20, to leave "room" for more specific trace types
in the Nexus format that could be defined in TMF.

The '''initTrace''' function will read the event names, and find where the data
starts. After this, the number of events is known, and since each event is 8
bytes long according to the specs, the seek is then trivial.

The '''seek''' here will just reset the reader to the right location.

The '''parseEvent''' method needs to parse and return the current event and
store the current location.

The '''getNext''' method (in base class) will read the next event and update the
context. It calls the '''parseEvent''' method to read the event and update the
location. It does not need to be overridden and in this example it is not. The
sequence of actions necessary are parse the next event from the trace, create an
'''ITmfEvent''' with that data, update the current location, call
'''updateAttributes''', update the context then return the event.

Traces will typically implement an index, to make seeking faster. The index can
be rebuilt every time the trace is opened. Alternatively, it can be saved to
disk, to make future openings of the same trace quicker. To do so, the trace
object can implement the '''ITmfPersistentlyIndexable''' interface.

=== Trace Context ===

The trace context will be a '''TmfContext'''.

=== Trace Location ===

The trace location will be a long, representing the rank in the file. The
'''TmfLongLocation''' will be the used, once again, no code is required.

=== The ''org.eclipse.linuxtools.tmf.core.tracetype'' and ''org.eclipse.linuxtools.tmf.ui.tracetypeui'' plug-in extension points ===

One should use the ''tmf.core.tracetype'' extension point in their own plug-in.
In this example, the Nexus trace plug-in will be modified.

The '''plugin.xml''' file in the ui plug-in needs to be updated if one wants
users to access the given event type. It can be updated in the Eclipse plug-in
editor.

# In Extensions tab, add the '''org.eclipse.linuxtools.tmf.core.tracetype''' extension point.
[[Image:images/NTTExtension.png]]<br>
[[Image:images/NTTTraceType.png]]<br>
[[Image:images/NTTExtensionPoint.png]]<br>

# Add in the '''org.eclipse.linuxtools.tmf.ui.tracetype''' extension a new type. To do that, '''right click''' on the extension then in the context menu, go to '''New >''', '''type'''.

[[Image:images/NTTAddType.png]]<br>

The '''id''' is the unique identifier used to refer to the trace.

The '''name''' is the field that shall be displayed when a trace type is selected.

The '''trace type''' is the canonical path refering to the class of the trace.

The '''event type''' is the canonical path refering to the class of the events of a given trace.

The  '''category''' (optional) is the container in which this trace type will be stored.

# (Optional) To also add UI-specific properties to your trace type, use the '''org.eclipse.linuxtools.tmf.ui.tracetypeui''' extension. To do that, '''right click''' on the extension then in the context menu, go to '''New >''', '''type'''.

The '''tracetype''' here is the '''id''' of the
''org.eclipse.linuxtools.tmf.core.tracetype'' mentioned above.

The '''icon''' is the image to associate with that trace type.

In the end, the extension menu should look like this.

[[Image:images/NTTPluginxmlComplete.png]]<br>

= View Tutorial =

This tutorial describes how to create a simple view using the TMF framework and the SWTChart library. SWTChart is a library based on SWT that can draw several types of charts including a line chart which we will use in this tutorial. We will create a view containing a line chart that displays time stamps on the X axis and the corresponding event values on the Y axis.

This tutorial will cover concepts like:

* Extending TmfView
* Signal handling (@TmfSignalHandler)
* Data requests (TmfEventRequest)
* SWTChart integration
* Use of the pin feature

'''Note''': Trace Compass 0.1.0 provides base implementations for generating SWTChart viewers and views. For more details please refer to chapter [[#TMF Built-in Views and Viewers]].

=== Prerequisites ===

The tutorial is based on Eclipse 4.4 (Eclipse Luna), Trace Compass 0.1.0 and SWTChart 0.7.0. If you are using TMF from the source repository, SWTChart is already included in the target definition file (see org.eclipse.tracecompass.target). You can also install it manually by using the Orbit update site. http://download.eclipse.org/tools/orbit/downloads/

=== Creating an Eclipse UI Plug-in ===

To create a new project with name org.eclipse.tracecompass.tmf.sample.ui select '''File -> New -> Project -> Plug-in Development -> Plug-in Project'''. <br>
[[Image:images/Screenshot-NewPlug-inProject1.png]]<br>

[[Image:images/Screenshot-NewPlug-inProject2.png]]<br>

[[Image:images/Screenshot-NewPlug-inProject3.png]]<br>

=== Creating a View ===

To open the plug-in manifest, double-click on the MANIFEST.MF file. <br>
[[Image:images/SelectManifest.png]]<br>

Change to the Dependencies tab and select '''Add...''' of the ''Required Plug-ins'' section. A new dialog box will open. Next find plug-in ''org.eclipse.tracecompass.tmf.core'' and press '''OK'''<br>
Following the same steps, add ''org.eclipse.tracecompass.tmf.ui'' and ''org.swtchart''.<br>
[[Image:images/AddDependencyTmfUi.png]]<br>

Change to the Extensions tab and select '''Add...''' of the ''All Extension'' section. A new dialog box will open. Find the view extension ''org.eclipse.ui.views'' and press '''Finish'''.<br>
[[Image:images/AddViewExtension1.png]]<br>

To create a view, click the right mouse button. Then select '''New -> view'''<br>
[[Image:images/AddViewExtension2.png]]<br>

A new view entry has been created. Fill in the fields ''id'' and ''name''. For ''class'' click on the '''class hyperlink''' and it will show the New Java Class dialog. Enter the name ''SampleView'', change the superclass to ''TmfView'' and click Finish. This will create the source file and fill the ''class'' field in the process. We use TmfView as the superclass because it provides extra functionality like getting the active trace, pinning and it has support for signal handling between components.<br>
[[Image:images/FillSampleViewExtension.png]]<br>

This will generate an empty class. Once the quick fixes are applied, the following code is obtained:

<pre>
package org.eclipse.tracecompass.tmf.sample.ui;

import org.eclipse.swt.widgets.Composite;
import org.eclipse.ui.part.ViewPart;

public class SampleView extends TmfView {

    public SampleView(String viewName) {
        super(viewName);
        // TODO Auto-generated constructor stub
    }

    @Override
    public void createPartControl(Composite parent) {
        // TODO Auto-generated method stub

    }

    @Override
    public void setFocus() {
        // TODO Auto-generated method stub

    }

}
</pre>

This creates an empty view, however the basic structure is now is place.

=== Implementing a view ===

We will start by adding a empty chart then it will need to be populated with the trace data. Finally, we will make the chart more visually pleasing by adjusting the range and formating the time stamps.

==== Adding an Empty Chart ====

First, we can add an empty chart to the view and initialize some of its components.

<pre>
    private static final String SERIES_NAME = "Series";
    private static final String Y_AXIS_TITLE = "Signal";
    private static final String X_AXIS_TITLE = "Time";
    private static final String FIELD = "value"; // The name of the field that we want to display on the Y axis
    private static final String VIEW_ID = "org.eclipse.tracecompass.tmf.sample.ui.view";
    private Chart chart;
    private ITmfTrace currentTrace;

    public SampleView() {
        super(VIEW_ID);
    }

    @Override
    public void createPartControl(Composite parent) {
        chart = new Chart(parent, SWT.BORDER);
        chart.getTitle().setVisible(false);
        chart.getAxisSet().getXAxis(0).getTitle().setText(X_AXIS_TITLE);
        chart.getAxisSet().getYAxis(0).getTitle().setText(Y_AXIS_TITLE);
        chart.getSeriesSet().createSeries(SeriesType.LINE, SERIES_NAME);
        chart.getLegend().setVisible(false);
    }

    @Override
    public void setFocus() {
        chart.setFocus();
    }
</pre>

The view is prepared. Run the Example. To launch the an Eclipse Application select the ''Overview'' tab and click on '''Launch an Eclipse Application'''<br>
[[Image:images/RunEclipseApplication.png]]<br>

A new Eclipse application window will show. In the new window go to '''Windows -> Show View -> Other... -> Other -> Sample View'''.<br>
[[Image:images/ShowViewOther.png]]<br>

You should now see a view containing an empty chart<br>
[[Image:images/EmptySampleView.png]]<br>

==== Signal Handling ====

We would like to populate the view when a trace is selected. To achieve this, we can use a signal hander which is specified with the '''@TmfSignalHandler''' annotation.

<pre>
    @TmfSignalHandler
    public void traceSelected(final TmfTraceSelectedSignal signal) {

    }
</pre>

==== Requesting Data ====

Then we need to actually gather data from the trace. This is done asynchronously using a ''TmfEventRequest''

<pre>
    @TmfSignalHandler
    public void traceSelected(final TmfTraceSelectedSignal signal) {
        // Don't populate the view again if we're already showing this trace
        if (currentTrace == signal.getTrace()) {
            return;
        }
        currentTrace = signal.getTrace();

        // Create the request to get data from the trace

        TmfEventRequest req = new TmfEventRequest(TmfEvent.class,
                TmfTimeRange.ETERNITY, 0, ITmfEventRequest.ALL_DATA,
                ITmfEventRequest.ExecutionType.BACKGROUND) {

            @Override
            public void handleData(ITmfEvent data) {
                // Called for each event
                super.handleData(data);
            }

            @Override
            public void handleSuccess() {
                // Request successful, not more data available
                super.handleSuccess();
            }

            @Override
            public void handleFailure() {
                // Request failed, not more data available
                super.handleFailure();
            }
        };
        ITmfTrace trace = signal.getTrace();
        trace.sendRequest(req);
    }
</pre>

==== Transferring Data to the Chart ====

The chart expects an array of doubles for both the X and Y axis values. To provide that, we can accumulate each event's time and value in their respective list then convert the list to arrays when all events are processed.

<pre>
        TmfEventRequest req = new TmfEventRequest(TmfEvent.class,
                TmfTimeRange.ETERNITY, 0, ITmfEventRequest.ALL_DATA,
                ITmfEventRequest.ExecutionType.BACKGROUND) {

            ArrayList<Double> xValues = new ArrayList<Double>();
            ArrayList<Double> yValues = new ArrayList<Double>();

            @Override
            public void handleData(ITmfEvent data) {
                // Called for each event
                super.handleData(data);
                ITmfEventField field = data.getContent().getField(FIELD);
                if (field != null) {
                    yValues.add((Double) field.getValue());
                    xValues.add((double) data.getTimestamp().getValue());
                }
            }

            @Override
            public void handleSuccess() {
                // Request successful, not more data available
                super.handleSuccess();

                final double x[] = toArray(xValues);
                final double y[] = toArray(yValues);

                // This part needs to run on the UI thread since it updates the chart SWT control
                Display.getDefault().asyncExec(new Runnable() {

                    @Override
                    public void run() {
                        chart.getSeriesSet().getSeries()[0].setXSeries(x);
                        chart.getSeriesSet().getSeries()[0].setYSeries(y);

                        chart.redraw();
                    }

                });
            }

            /**
             * Convert List<Double> to double[]
             */
            private double[] toArray(List<Double> list) {
                double[] d = new double[list.size()];
                for (int i = 0; i < list.size(); ++i) {
                    d[i] = list.get(i);
                }

                return d;
            }
        };
</pre>

==== Adjusting the Range ====

The chart now contains values but they might be out of range and not visible. We can adjust the range of each axis by computing the minimum and maximum values as we add events.

<pre>

            ArrayList<Double> xValues = new ArrayList<Double>();
            ArrayList<Double> yValues = new ArrayList<Double>();
            private double maxY = -Double.MAX_VALUE;
            private double minY = Double.MAX_VALUE;
            private double maxX = -Double.MAX_VALUE;
            private double minX = Double.MAX_VALUE;

            @Override
            public void handleData(ITmfEvent data) {
                super.handleData(data);
                ITmfEventField field = data.getContent().getField(FIELD);
                if (field != null) {
                    Double yValue = (Double) field.getValue();
                    minY = Math.min(minY, yValue);
                    maxY = Math.max(maxY, yValue);
                    yValues.add(yValue);

                    double xValue = (double) data.getTimestamp().getValue();
                    xValues.add(xValue);
                    minX = Math.min(minX, xValue);
                    maxX = Math.max(maxX, xValue);
                }
            }

            @Override
            public void handleSuccess() {
                super.handleSuccess();
                final double x[] = toArray(xValues);
                final double y[] = toArray(yValues);

                // This part needs to run on the UI thread since it updates the chart SWT control
                Display.getDefault().asyncExec(new Runnable() {

                    @Override
                    public void run() {
                        chart.getSeriesSet().getSeries()[0].setXSeries(x);
                        chart.getSeriesSet().getSeries()[0].setYSeries(y);

                        // Set the new range
                        if (!xValues.isEmpty() && !yValues.isEmpty()) {
                            chart.getAxisSet().getXAxis(0).setRange(new Range(0, x[x.length - 1]));
                            chart.getAxisSet().getYAxis(0).setRange(new Range(minY, maxY));
                        } else {
                            chart.getAxisSet().getXAxis(0).setRange(new Range(0, 1));
                            chart.getAxisSet().getYAxis(0).setRange(new Range(0, 1));
                        }
                        chart.getAxisSet().adjustRange();

                        chart.redraw();
                    }
                });
            }
</pre>

==== Formatting the Time Stamps ====

To display the time stamps on the X axis nicely, we need to specify a format or else the time stamps will be displayed as ''long''. We use TmfTimestampFormat to make it consistent with the other TMF views. We also need to handle the '''TmfTimestampFormatUpdateSignal''' to make sure that the time stamps update when the preferences change.

<pre>
    @Override
    public void createPartControl(Composite parent) {
        ...

        chart.getAxisSet().getXAxis(0).getTick().setFormat(new TmfChartTimeStampFormat());
    }

    public class TmfChartTimeStampFormat extends SimpleDateFormat {
        private static final long serialVersionUID = 1L;
        @Override
        public StringBuffer format(Date date, StringBuffer toAppendTo, FieldPosition fieldPosition) {
            long time = date.getTime();
            toAppendTo.append(TmfTimestampFormat.getDefaulTimeFormat().format(time));
            return toAppendTo;
        }
    }

    @TmfSignalHandler
    public void timestampFormatUpdated(TmfTimestampFormatUpdateSignal signal) {
        // Called when the time stamp preference is changed
        chart.getAxisSet().getXAxis(0).getTick().setFormat(new TmfChartTimeStampFormat());
        chart.redraw();
    }
</pre>

We also need to populate the view when a trace is already selected and the view is opened. We can reuse the same code by having the view send the '''TmfTraceSelectedSignal''' to itself.

<pre>
    @Override
    public void createPartControl(Composite parent) {
        ...

        ITmfTrace trace = getActiveTrace();
        if (trace != null) {
            traceSelected(new TmfTraceSelectedSignal(this, trace));
        }
    }
</pre>

The view is now ready but we need a proper trace to test it. For this example, a trace was generated using LTTng-UST so that it would produce a sine function.<br>

[[Image:images/SampleView.png]]<br>

In summary, we have implemented a simple TMF view using the SWTChart library. We made use of signals and requests to populate the view at the appropriate time and we formated the time stamps nicely. We also made sure that the time stamp format is updated when the preferences change.

==== Pin feature ====

The pin feature allows pinning a view to a specific trace. A pinned view will not synchronize on active trace changes. How the view implements the pinning and unpinning is up to the view itself.

Sub-classes of TmfView may optionally support the pin feature by implementing the ITmfPinnable interface. The view then provides a pin button in its toolbar.<br>
[[Image:images/TmfViewPinAction.png]]<br>

It is the view's responsibility to take the proper actions when the view is pinned.

<pre>
    @Override
    public synchronized void setPinned(ITmfTrace trace) {
        if (trace != null) {
           /* pinned code */
        } else {
           /* unpinned code */
        }
    }
</pre>

== TMF Built-in Views and Viewers ==

TMF provides base implementations for several types of views and viewers for generating custom X-Y-Charts, Time Graphs, or Trees. They are well integrated with various TMF features such as reading traces and time synchronization with other views. They also handle mouse events for navigating the trace and view, zooming or presenting detailed information at mouse position. The code can be found in the TMF UI plug-in ''org.eclipse.tracecompass.tmf.ui''. See below for a list of relevant java packages:

* Generic
** ''org.eclipse.tracecompass.tmf.ui.views'': Common TMF view base classes
* X-Y-Chart
** ''org.eclipse.tracecompass.tmf.ui.viewers.xycharts'': Common base classes for X-Y-Chart viewers based on SWTChart
** ''org.eclipse.tracecompass.tmf.ui.viewers.xycharts.barcharts'': Base classes for bar charts
** ''org.eclipse.tracecompass.tmf.ui.viewers.xycharts.linecharts'': Base classes for line charts
* Time Graph View
** ''org.eclipse.tracecompass.tmf.ui.widgets.timegraph'': Base classes for time graphs e.g. Gantt-charts
* Tree Viewer
** ''org.eclipse.tracecompass.tmf.ui.viewers.tree'': Base classes for TMF specific tree viewers

Several features in TMF and the Eclipse LTTng integration are using this framework and can be used as example for further developments:
* X-Y- Chart
** ''org.eclipse.tracecompass.internal.lttng2.ust.ui.views.memusage.MemUsageView.java''
** ''org.eclipse.tracecompass.analysis.os.linux.ui.views.cpuusage.CpuUsageView.java''
** ''org.eclipse.tracecompass.tracing.examples.ui.views.histogram.NewHistogramView.java''
* Time Graph View
** ''org.eclipse.tracecompass.analysis.os.linux.ui.views.controlflow.ControlFlowView.java''
** ''org.eclipse.tracecompass.analysis.os.linux.ui.views.resources.ResourcesView.java''
* Tree Viewer
** ''org.eclipse.tracecompass.tmf.ui.views.statesystem.TmfStateSystemExplorer.java''
** ''org.eclipse.tracecompass.analysis.os.linux.ui.views.cpuusage.CpuUsageComposite.java''

== Timing Analysis Views and Viewers ==

Trace Compass provides base implementations for timing views and viewers for generating Latency Tables, Scatter Charts, Density Graphs and Statistics Tables. They are well integrated with various Trace Compass features such as reading traces and time synchronization with other views. They also handle mouse events for navigating the trace and view, zooming or presenting detailed information at mouse position. The code can be found in the Analysis Timing plug-in ''org.eclipse.tracecompass.analysis.timing.ui''. See below for a list of relevant java packages:

* Latency Table
** ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.table'': Base classes for Latency Tables
* Scatter Chart
** ''org.eclipse.tracecompass.tmf.ui.views.tmfChartView.java'': Common base classes for X-Y-Chart viewers based on SWTChart
** ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.scatter'': Base classes for Scatter Charts
* Density Graph
** ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.density'': Base classes for Density Graphs
* Statistics Table
** ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.statistics'': Base classes for Statistics Tables

A default implementation of some of those views can be used by analyzes without requiring to extend existing classes. It just needs to use the default view's ID as primary ID and the analysis ID as the secondary ID.

* Table view: It will use the segment aspects as supplementary columns. In the plugin.xml, a view extension shoud be defined with class ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.table.SegmentStoreTableView'' and ID ''org.eclipse.tracecompass.analysis.timing.ui.segstore.table:<my.analysis.ID>'' where ''<my.analysis.ID>'' should be replaced by the segment store provider's analysis ID. This ID can then be used as view ID in the module's output.
* Statistics view: It will create a segment store statistics analysis and the type of segment is defined by its name, so this view applies only for segments implementing INamedSegment. In the plugin.xml, a view extension shoud be defined with class ''org.eclipse.tracecompass.analysis.timing.ui.views.segmentstore.statistics.SegmentStoreStatisticsView'' and ID ''org.eclipse.tracecompass.analysis.timing.ui.segstore.statistics:<my.analysis.ID>'' where ''<my.analysis.ID>'' should be replaced by the segment store provider's analysis ID. This ID can then be used as view ID in the module's output.

Several features in Trace Compass are using this framework and can be used as example for further development:

* Latency Table
** ''org.eclipse.tracecompass.internal.tmf.analysis.xml.ui.views.latency.PatternLatencyTableView.java''
* Scatter Chart
** ''org.eclipse.tracecompass.internal.analysis.os.linux.ui.views.latency.SystemCallLatencyScatterView.java''
** ''org.eclipse.tracecompass.internal.tmf.analysis.xml.ui.views.latency.PatternScatterGraphView.java''
* Density Graph
** ''org.eclipse.tracecompass.internal.analysis.os.linux.ui.views.latency.SystemCallLatencyDensityView.java''
** ''org.eclipse.tracecompass.internal.tmf.analysis.xml.ui.views.latency.PatternDensityView.java''
* Statistics Table
** ''org.eclipse.tracecompass.internal.tmf.analysis.xml.ui.views.latency.PatternStatisticsView.java''

= Component Interaction =

TMF provides a mechanism for different components to interact with each other using signals. The signals can carry information that is specific to each signal.

The TMF Signal Manager handles registration of components and the broadcasting of signals to their intended receivers.

Components can register as VIP receivers which will ensure they will receive the signal before non-VIP receivers.

== Sending Signals ==

In order to send a signal, an instance of the signal must be created and passed as argument to the signal manager to be dispatched. Every component that can handle the signal will receive it. The receivers do not need to be known by the sender.

<pre>
TmfExampleSignal signal = new TmfExampleSignal(this, ...);
TmfSignalManager.dispatchSignal(signal);
</pre>

If the sender is an instance of the class TmfComponent, the broadcast method can be used:

<pre>
TmfExampleSignal signal = new TmfExampleSignal(this, ...);
broadcast(signal);
</pre>

== Receiving Signals ==

In order to receive any signal, the receiver must first be registered with the signal manager. The receiver can register as a normal or VIP receiver.

<pre>
TmfSignalManager.register(this);
TmfSignalManager.registerVIP(this);
</pre>

If the receiver is an instance of the class TmfComponent, it is automatically registered as a normal receiver in the constructor.

When the receiver is destroyed or disposed, it should deregister itself from the signal manager.

<pre>
TmfSignalManager.deregister(this);
</pre>

To actually receive and handle any specific signal, the receiver must use the @TmfSignalHandler annotation and implement a method that will be called when the signal is broadcast. The name of the method is irrelevant.

<pre>
@TmfSignalHandler
public void example(TmfExampleSignal signal) {
    ...
}
</pre>

The source of the signal can be used, if necessary, by a component to filter out and ignore a signal that was broadcast by itself when the component is also a receiver of the signal but only needs to handle it when it was sent by another component or another instance of the component.

== Signal Throttling ==

It is possible for a TmfComponent instance to buffer the dispatching of signals so that only the last signal queued after a specified delay without any other signal queued is sent to the receivers. All signals that are preempted by a newer signal within the delay are discarded.

The signal throttler must first be initialized:

<pre>
final int delay = 100; // in ms
TmfSignalThrottler throttler = new TmfSignalThrottler(this, delay);
</pre>

Then the sending of signals should be queued through the throttler:

<pre>
TmfExampleSignal signal = new TmfExampleSignal(this, ...);
throttler.queue(signal);
</pre>

When the throttler is no longer needed, it should be disposed:

<pre>
throttler.dispose();
</pre>

== Ignoring inbound/outbound signals ==

It is possible to stop certain signals from being sent or received.

To block all incoming signals to an object:

<pre>
    TmfSignalManager.addIgnoredInboundSignal(objectInstance, TmfSignal.class);
</pre>

To block all outgoing signals originating from an object:

<pre>
    TmfSignalManager.addIgnoredOutboundSignal(objectInstance, TmfSignal.class);
</pre>

The blocked signal filtering is based on type hierarchy. Blocking <code>TmfSignal.class</code> will result in blocking all signals derived from TmfSignal. Blocking <code>TmfTraceSelectedSignal</code> will block all signals of this type and derived signals from <code>TmfTraceSelectedSignal</code>

To remove an ignore rule or clear them all:
<pre>
    TmfSignalManager.removeIgnoredOutboundSignal(Object source, Class<? extends TmfSignal> signal)
    TmfSignalManager.removeIgnoredInboundSignal(Object listener, Class<? extends TmfSignal> signal)
    TmfSignalManager.clearIgnoredOutboundSignalList(Object source)
    TmfSignalManager.clearIgnoredInboundSignalList(Object listener)
</pre>


== Signal Reference ==

The following is a list of built-in signals defined in the framework.

=== TmfStartSynchSignal ===

''Purpose''

This signal is used to indicate the start of broadcasting of a signal. Internally, the data provider will not fire event requests until the corresponding TmfEndSynchSignal signal is received. This allows coalescing of requests triggered by multiple receivers of the broadcast signal.

''Senders''

Sent by TmfSignalManager before dispatching a signal to all receivers.

''Receivers''

Received by TmfDataProvider.

=== TmfEndSynchSignal ===

''Purpose''

This signal is used to indicate the end of broadcasting of a signal. Internally, the data provider fire all pending event requests that were received and buffered since the corresponding TmfStartSynchSignal signal was received. This allows coalescing of requests triggered by multiple receivers of the broadcast signal.

''Senders''

Sent by TmfSignalManager after dispatching a signal to all receivers.

''Receivers''

Received by TmfDataProvider.

=== TmfTraceOpenedSignal ===

''Purpose''

This signal is used to indicate that a trace has been opened in an editor.

''Senders''

Sent by a TmfEventsEditor instance when it is created.

''Receivers''

Received by TmfTrace, TmfExperiment, TmfTraceManager and every view that shows trace data. Components that show trace data should handle this signal.

=== TmfTraceSelectedSignal ===

''Purpose''

This signal is used to indicate that a trace has become the currently selected trace.

''Senders''

Sent by a TmfEventsEditor instance when it receives focus. Components can send this signal to make a trace editor be brought to front.

''Receivers''

Received by TmfTraceManager and every view that shows trace data. Components that show trace data should handle this signal.

=== TmfTraceClosedSignal ===

''Purpose''

This signal is used to indicate that a trace editor has been closed.

''Senders''

Sent by a TmfEventsEditor instance when it is disposed.

''Receivers''

Received by TmfTraceManager and every view that shows trace data. Components that show trace data should handle this signal.

=== TmfTraceRangeUpdatedSignal ===

''Purpose''

This signal is used to indicate that the valid time range of a trace has been updated. This triggers indexing of the trace up to the end of the range. In the context of streaming, this end time is considered a safe time up to which all events are guaranteed to have been completely received. For non-streaming traces, the end time is set to infinity indicating that all events can be read immediately. Any processing of trace events that wants to take advantage of request coalescing should be triggered by this signal.

''Senders''

Sent by TmfExperiment and non-streaming TmfTrace. Streaming traces should send this signal in the TmfTrace subclass when a new safe time is determined by a specific implementation.

''Receivers''

Received by TmfTrace, TmfExperiment and components that process trace events. Components that need to process trace events should handle this signal.

=== TmfTraceUpdatedSignal ===

''Purpose''

This signal is used to indicate that new events have been indexed for a trace.

''Senders''

Sent by TmfCheckpointIndexer when new events have been indexed and the number of events has changed.

''Receivers''

Received by components that need to be notified of a new trace event count.

=== TmfSelectionRangeUpdatedSignal ===

''Purpose''

This signal is used to indicate that a new time or time range has been
selected. It contains a begin and end time. If a single time is selected then
the begin and end time are the same.

''Senders''

Sent by any component that allows the user to select a time or time range.

''Receivers''

Received by any component that needs to be notified of the currently selected time or time range.

=== TmfWindowRangeUpdatedSignal ===

''Purpose''

This signal is used to indicate that a new time range window has been set.

''Senders''

Sent by any component that allows the user to set a time range window.

''Receivers''

Received by any component that needs to be notified of the current visible time range window.

=== TmfEventFilterAppliedSignal ===

''Purpose''

This signal is used to indicate that a filter has been applied to a trace.

''Senders''

Sent by TmfEventsTable when a filter is applied.

''Receivers''

Received by any component that shows trace data and needs to be notified of applied filters.

=== TmfEventSearchAppliedSignal ===

''Purpose''

This signal is used to indicate that a search has been applied to a trace.

''Senders''

Sent by TmfEventsTable when a search is applied.

''Receivers''

Received by any component that shows trace data and needs to be notified of applied searches.

=== TmfTimestampFormatUpdateSignal ===

''Purpose''

This signal is used to indicate that the timestamp format preference has been updated.

''Senders''

Sent by TmfTimestampFormat when the default timestamp format preference is changed.

''Receivers''

Received by any component that needs to refresh its display for the new timestamp format.

=== TmfStatsUpdatedSignal ===

''Purpose''

This signal is used to indicate that the statistics data model has been updated.

''Senders''

Sent by statistic providers when new statistics data has been processed.

''Receivers''

Received by statistics viewers and any component that needs to be notified of a statistics update.

=== TmfPacketStreamSelected ===

''Purpose''

This signal is used to indicate that the user has selected a packet stream to analyze.

''Senders''

Sent by the Stream List View when the user selects a new packet stream.

''Receivers''

Received by views that analyze packet streams.

=== TmfStartAnalysisSignal ===

''Purpose''

This signal is used to indicate that an analysis has started.

''Senders''

Sent by an analysis module when it starts to execute the analyis.

''Receivers''

Received by components that need to be notified of the start of an analysis
or that need to receive the analysis module.

=== TmfCpuSelectedSignal ===

''Purpose''

This signal is used to indicate that the user has selected a CPU core.

''Senders''

Sent by any component that allows the user to select a CPU.

''Receivers''

Received by viewers that show information specific to a selected CPU.

=== TmfThreadSelectedSignal ===

''Purpose''

This signal is used to indicate that the user has selected a thread.

''Senders''

Sent by any component that allows the user to select a thread.

''Receivers''

Received by viewers that show information specific to a selected thread.

=== TmfSymbolProviderUpdatedSignal ===

''Purpose''

This signal is used to indicate that the user has updated the symbol mapping.

''Senders''

Sent by symbol providers or managers when more information is available.

''Receivers''

Received by viewers that show information specific to mapped symbol, typically a function call.

=== TmfTraceSynchronizedSignal ===

''Purpose''

This signal is used to indicate that trace synchronization has been completed.

''Senders''

Sent by the experiment after trace synchronization.

''Receivers''

Received by any component that needs to be notified of trace synchronization.

=== TmfMarkerEventSourceUpdatedSignal ===

''Purpose''

This signal is used to indicate that a marker event source has been updated.

''Senders''

Sent by a component that has triggered a change in a marker event source.

''Receivers''

Received by any component that needs to refresh the markers due to the change in marker event source.

== Debugging ==

TMF has built-in Eclipse tracing support for the debugging of signal interaction between components. To enable it, open the '''Run/Debug Configuration...''' dialog, select a configuration, click the '''Tracing''' tab, select the plug-in '''org.eclipse.tracecompass.tmf.core''', and check the '''signal''' item.

All signals sent and received will be logged to the file TmfTrace.log located in the Eclipse home directory.

= Generic State System =

== Introduction ==

The Generic State System is a utility available in TMF to track different states
over the duration of a trace. It works by first sending some or all events of
the trace into a state provider, which defines the state changes for a given
trace type. Once built, views and analysis modules can then query the resulting
database of states (called "state history") to get information.

For example, let's suppose we have the following sequence of events in a kernel
trace:

 10 s, sys_open, fd = 5, file = /home/user/myfile
 ...
 15 s, sys_read, fd = 5, size=32
 ...
 20 s, sys_close, fd = 5

Now let's say we want to implement an analysis module which will track the
amount of bytes read and written to each file. Here, of course the sys_read is
interesting. However, by just looking at that event, we have no information on
which file is being read, only its fd (5) is known. To get the match
fd5 = /home/user/myfile, we have to go back to the sys_open event which happens
5 seconds earlier.

But since we don't know exactly where this sys_open event is, we will have to go
back to the very start of the trace, and look through events one by one! This is
obviously not efficient, and will not scale well if we want to analyze many
similar patterns, or for very large traces.

A solution in this case would be to use the state system to keep track of the
amount of bytes read/written to every *filename* (instead of every file
descriptor, like we get from the events). Then the module could ask the state
system "what is the amount of bytes read for file "/home/user/myfile" at time
16 s", and it would return the answer "32" (assuming there is no other read
than the one shown).

== High-level components ==

The State System infrastructure is composed of 3 parts:
* The state provider
* The central state system
* The storage backend

The state provider is the customizable part. This is where the mapping from
trace events to state changes is done. This is what you want to implement for
your specific trace type and analysis type. It's represented by the
ITmfStateProvider interface (with a threaded implementation in
AbstractTmfStateProvider, which you can extend).

The core of the state system is exposed through the ITmfStateSystem and
ITmfStateSystemBuilder interfaces. The former allows only read-only access and
is typically used for views doing queries. The latter also allows writing to the
state history, and is typically used by the state provider.

Finally, each state system has its own separate backend. This determines how the
intervals, or the "state history", are saved (in RAM, on disk, etc.) You can
select the type of backend at construction time in the TmfStateSystemFactory.

== Definitions ==

Before we dig into how to use the state system, we should go over some useful
definitions:

=== Attribute ===

An attribute is the smallest element of the model that can be in any particular
state. When we refer to the "full state", in fact it means we are interested in
the state of every single attribute of the model.

=== Attribute Tree ===

Attributes in the model can be placed in a tree-like structure, a bit like files
and directories in a file system. However, note that an attribute can always
have both a value and sub-attributes, so they are like files and directories at
the same time. We are then able to refer to every single attribute with its
path in the tree.

For example, in the attribute tree for Linux kernel traces, we use the following
attributes, among others:

<pre>
|- Processes
|    |- 1000
|    |   |- PPID
|    |   |- Exec_name
|    |- 1001
|    |   |- PPID
|    |   |- Exec_name
|   ...
|- CPUs
     |- 0
     |  |- Status
     |  |- Current_pid
    ...
</pre>

In this model, the attribute "Processes/1000/PPID" refers to the PPID of process
with PID 1000. The attribute "CPUs/0/Status" represents the status (running,
idle, etc.) of CPU 0. "Processes/1000/PPID" and "Processes/1001/PPID" are two
different attribute, even though their base name is the same: the whole path is
the unique identifier.

The value of each attribute can change over the duration of the trace,
independently of the other ones, and independently of its position in the tree.

The tree-like organization is optional, all attributes could be at the same
level. But it's possible to put them in a tree, and it helps make things
clearer.

=== Quark ===

In addition to a given path, each attribute also has a unique integer
identifier, called the "quark". To continue with the file system analogy, this
is like the inode number. When a new attribute is created, a new unique quark
will be assigned automatically. They are assigned incrementally, so they will
normally be equal to their order of creation, starting at 0.

Methods are offered to get the quark of an attribute from its path. The API
methods for inserting state changes and doing queries normally use quarks
instead of paths. This is to encourage users to cache the quarks and re-use
them, which avoids re-walking the attribute tree over and over, which avoids
unneeded hashing of strings.

=== State value ===

The path and quark of an attribute will remain constant for the whole duration
of the trace. However, the value carried by the attribute will change. The value
of a specific attribute at a specific time is called the state value.

In the TMF implementation, state values can be integers, longs, doubles, or strings.
There is also a "null value" type, which is used to indicate that no particular
value is active for this attribute at this time, but without resorting to a
'null' reference.

Any other type of value could be used, as long as the backend knows how to store
it.

Note that the TMF implementation also forces every attribute to always carry the
same type of state value. This is to make it simpler for views, so they can
expect that an attribute will always use a given type, without having to check
every single time. Null values are an exception, they are always allowed for all
attributes, since they can safely be "unboxed" into all types.

=== State change ===

A state change is the element that is inserted in the state system. It consists
of:
* a timestamp (the time at which the state change occurs)
* an attribute (the attribute whose value will change)
* a state value (the new value that the attribute will carry)

It's not an object per se in the TMF implementation (it's represented by a
function call in the state provider). Typically, the state provider will insert
zero, one or more state changes for every trace event, depending on its event
type, payload, etc.

Note, we use "timestamp" here, but it's in fact a generic term that could be
referred to as "index". For example, if a given trace type has no notion of
timestamp, the event rank could be used.

In the TMF implementation, the timestamp is a long (64-bit integer).

=== State interval ===

State changes are inserted into the state system, but state intervals are the
objects that come out on the other side. Those are stocked in the storage
backend. A state interval represents a "state" of an attribute we want to track.
When doing queries on the state system, intervals are what is returned. The
components of a state interval are:
* Start time
* End time
* State value
* Quark

The start and end times represent the time range of the state. The state value
is the same as the state value in the state change that started this interval.
The interval also keeps a reference to its quark, although you normally know
your quark in advance when you do queries.

=== State history ===

The state history is the name of the container for all the intervals created by
the state system. The exact implementation (how the intervals are stored) is
determined by the storage backend that is used.

Some backends will use a state history that is persistent on disk, others do not.
When loading a trace, if a history file is available and the backend supports
it, it will be loaded right away, skipping the need to go through another
construction phase.

=== Construction phase ===

Before we can query a state system, we need to build the state history first. To
do so, trace events are sent one-by-one through the state provider, which in
turn sends state changes to the central component, which then creates intervals
and stores them in the backend. This is called the construction phase.

Note that the state system needs to receive its events into chronological order.
This phase will end once the end of the trace is reached.

Also note that it is possible to query the state system while it is being build.
Any timestamp between the start of the trace and the current end time of the
state system (available with ITmfStateSystem#getCurrentEndTime()) is a valid
timestamp that can be queried.

=== Queries ===

As mentioned previously, when doing queries on the state system, the returned
objects will be state intervals. In most cases it's the state *value* we are
interested in, but since the backend has to instantiate the interval object
anyway, there is no additional cost to return the interval instead. This way we
also get the start and end times of the state "for free".

There are two types of queries that can be done on the state system:

==== Full queries ====

A full query means that we want to retrieve the whole state of the model for one
given timestamp. As we remember, this means "the state of every single attribute
in the model". As parameter we only need to pass the timestamp (see the API
methods below). The return value will be an array of intervals, where the offset
in the array represents the quark of each attribute.

==== Single queries ====

In other cases, we might only be interested in the state of one particular
attribute at one given timestamp. For these cases it's better to use a
single query. For a single query, we need to pass both a timestamp and a
quark in parameter. The return value will be a single interval, representing
the state that this particular attribute was at that time.

Single queries are typically faster than full queries (but once again, this
depends on the backend that is used), but not by much. Even if you only want the
state of say 10 attributes out of 200, it could be faster to use a full query
and only read the ones you need. Single queries should be used for cases where
you only want one attribute per timestamp (for example, if you follow the state
of the same attribute over a time range).

==== 2D queries ====

2D queries are useful and more efficient than the previous two when querying several attributes at multiple time stamps.
This type of query returns an iterable of the intervals matching the queried attributes and that overlap the queried time range or one of the queried time stamps.
It is more efficient because it batches the queries and searches the backend for all the desired intervals in a single pass.
The returned iterable is lazily evaluated, so it can be interrupted in an intermediate state at no cost.
This type of query is recommended for querying backends to populate views where a subset of attributes are queried on a sampled time range.
The returned iterable is '''not ordered''' to limit overhead.


== Relevant interfaces/classes ==

This section will describe the public interface and classes that can be used if
you want to use the state system.

=== Main classes in org.eclipse.tracecompass.tmf.core.statesystem ===

==== ITmfStateProvider / AbstractTmfStateProvider ====

ITmfStateProvider is the interface you have to implement to define your state
provider. This is where most of the work has to be done to use a state system
for a custom trace type or analysis type.

For first-time users, it's recommended to extend AbstractTmfStateProvider
instead. This class takes care of all the initialization mumbo-jumbo, and also
runs the event handler in a separate thread. You will only need to implement
eventHandle, which is the call-back that will be called for every event in the
trace.

For an example, you can look at StatsStateProvider in the TMF tree, or at the
small example below.

==== TmfStateSystemFactory ====

Once you have defined your state provider, you need to tell your trace type to
build a state system with this provider during its initialization. This consists
of overriding TmfTrace#buildStateSystems() and in there of calling the method in
TmfStateSystemFactory that corresponds to the storage backend you want to use
(see the section [[#Comparison of state system backends]]).

You will have to pass in parameter the state provider you want to use, which you
should have defined already. Each backend can also ask for more configuration
information.

You must then call registerStateSystem(id, statesystem) to make your state
system visible to the trace objects and the views. The ID can be any string of
your choosing. To access this particular state system, the views or modules will
need to use this ID.

Also, don't forget to call super.buildStateSystems() in your implementation,
unless you know for sure you want to skip the state providers built by the
super-classes.

You can look at how LttngKernelTrace does it for an example. It could also be
possible to build a state system only under certain conditions (like only if the
trace contains certain event types).


==== ITmfStateSystem ====

ITmfStateSystem is the main interface through which views or analysis modules
will access the state system. It offers a read-only view of the state system,
which means that no states can be inserted, and no attributes can be created.
Calling TmfTrace#getStateSystems().get(id) will return you a ITmfStateSystem
view of the requested state system. The main methods of interest are:

===== getQuarkAbsolute()/getQuarkRelative() =====

Those are the basic quark-getting methods. The goal of the state system is to
return the state values of given attributes at given timestamps. As we've seen
earlier, attributes can be described with a file-system-like path. The goal of
these methods is to convert from the path representation of the attribute to its
quark.

Since quarks are created on-the-fly, there is no guarantee that the same
attributes will have the same quark for two traces of the same type. The views
should always query their quarks when dealing with a new trace or a new state
provider. Beyond that however, quarks should be cached and reused as much as
possible, to avoid potentially costly string re-hashing.

getQuarkAbsolute() takes a variable amount of Strings in parameter, which
represent the full path to the attribute. Some of them can be constants, some
can come programmatically, often from the event's fields.

getQuarkRelative() is to be used when you already know the quark of a certain
attribute, and want to access on of its sub-attributes. Its first parameter is
the origin quark, followed by a String varagrs which represent the relative path
to the final attribute.

These two methods will throw an AttributeNotFoundException if trying to access
an attribute that does not exist in the model.

These methods also imply that the view has the knowledge of how the attribute
tree is organized. This should be a reasonable hypothesis, since the same
analysis plugin will normally ship both the state provider and the view, and
they will have been written by the same person. In other cases, it's possible to
use getSubAttributes() to explore the organization of the attribute tree first.

===== optQuarkAbsolute()/optQuarkRelative() =====

These two methods are similar to their counterparts getQuarkAbsolute() and
getQuarkRelative(). The only difference is that if the referenced attribute does
not exist, the value ITmfStateSystem#INVALID_ATTRIBUTE (-2) is returned instead
of throwing an exception.

These methods should be used when the presence of the referenced attribute is
known to be optional, to avoid the performance cost of generating exceptions.

===== getQuarks() =====

This method (with or without a starting node quark) takes an attribute path
array which may contain wildcard "*" or parent ".." elements, and returns the
list of matching attribute quarks. If no matching attribute is found, an empty
list is returned.

===== waitUntilBuilt() =====

This is a simple method used to block the caller until the construction phase of
this state system is done. If the view prefers to wait until all information is
available before starting to do queries (to get all known attributes right away,
for example), this is the guy to call.

===== queryFullState() =====

This is the method to do full queries. As mentioned earlier, you only need to
pass a target timestamp in parameter. It will return a List of state intervals,
in which the offset corresponds to the attribute quark. This will represent the
complete state of the model at the requested time.

===== querySingleState() =====

The method to do single queries. You pass in parameter both a timestamp and an
attribute quark. This will return the single state matching this
timestamp/attribute pair.

Other methods are available, you are encouraged to read their Javadoc and see if
they can be potentially useful.

==== ITmfStateSystemBuilder ====

ITmfStateSystemBuilder is the read-write interface to the state system. It
extends ITmfStateSystem itself, so all its methods are available. It then adds
methods that can be used to write to the state system, either by creating new
attributes of inserting state changes.

It is normally reserved for the state provider and should not be visible to
external components. However it will be available in AbstractTmfStateProvider,
in the field 'ss'. That way you can call ss.modifyAttribute() etc. in your state
provider to write to the state.

The main methods of interest are:

===== getQuark*AndAdd() =====

getQuarkAbsoluteAndAdd() and getQuarkRelativeAndAdd() work exactly like their
non-AndAdd counterparts in ITmfStateSystem. The difference is that the -AndAdd
versions will not throw any exception: if the requested attribute path does not
exist in the system, it will be created, and its newly-assigned quark will be
returned.

When in a state provider, the -AndAdd version should normally be used (unless
you know for sure the attribute already exist and don't want to create it
otherwise). This means that there is no need to define the whole attribute tree
in advance, the attributes will be created on-demand.

===== modifyAttribute() =====

This is the main state-change-insertion method. As was explained before, a state
change is defined by a timestamp, an attribute and an object representing the value
of this state. Those three elements need to be passed to modifyAttribute as parameters.

Other state change insertion methods are available (increment-, push-, pop- and
removeAttribute()), but those are simply convenience wrappers around
modifyAttribute(). Check their Javadoc for more information.

===== closeHistory() =====

When the construction phase is done, do not forget to call closeHistory() to
tell the backend that no more intervals will be received. Depending on the
backend type, it might have to save files, close descriptors, etc. This ensures
that a persistent file can then be re-used when the trace is opened again.

If you use the AbstractTmfStateProvider, it will call closeHistory()
automatically when it reaches the end of the trace.

=== Other relevant interfaces ===

==== ITmfStateValue ====

This is the interface used to represent state values. Those are used when
inserting state changes in the provider, and is also part of the state intervals
obtained when doing queries.

The abstract TmfStateValue class contains the factory methods to create new
state values of either int, long, double or string types. To retrieve the real
object inside the state value, one can use the .unbox* methods.

Note: Do not instantiate null values manually, use TmfStateValue.nullValue()

==== ITmfStateInterval ====

This is the interface to represent the state intervals, which are stored in the
state history backend, and are returned when doing state system queries. A very
simple implementation is available in TmfStateInterval. Its methods should be
self-descriptive.

=== Exceptions ===

The following exceptions, found in o.e.t.statesystem.core.exceptions, are related to
state system activities.

==== AttributeNotFoundException ====

This is thrown by getQuarkRelative() and getQuarkAbsolute() (but not by the
-AndAdd versions!) when passing an attribute path that is not present in the
state system. This is to ensure that no new attribute is created when using
these versions of the methods.

Views can expect some attributes to be present, but they should handle these
exceptions for when the attributes end up not being in the state system (perhaps
this particular trace didn't have a certain type of events, etc.)

==== StateValueTypeException ====

This exception will be thrown when trying to unbox a state value into a type
different than its own. You should always check with ITmfStateValue#getType()
beforehand if you are not sure about the type of a given state value.

==== TimeRangeException ====

This exception is thrown when trying to do a query on the state system for a
timestamp that is outside of its range. To be safe, you should check with
ITmfStateSystem#getStartTime() and #getCurrentEndTime() for the current valid
range of the state system. This is especially important when doing queries on
a state system that is currently being built.

==== StateSystemDisposedException ====

This exception is thrown when trying to access a state system that has been
disposed, with its dispose() method. This can potentially happen at shutdown,
since Eclipse is not always consistent with the order in which the components
are closed.


== Comparison of state system backends ==

As we have seen in section [[#High-level components]], the state system needs
a storage backend to save the intervals. Different implementations are
available when building your state system from TmfStateSystemFactory.

Do not confuse full/single queries with full/partial history! All backend types
should be able to handle any type of queries defined in the ITmfStateSystem API,
unless noted otherwise.

=== Full history ===

Available with TmfStateSystemFactory#newFullHistory(). The full history uses a
History Tree data structure, which is an optimized structure store state
intervals on disk. Once built, it can respond to queries in a ''log(n)'' manner.

You need to specify a file at creation time, which will be the container for
the history tree. Once it's completely built, it will remain on disk (until you
delete the trace from the project). This way it can be reused from one session
to another, which makes subsequent loading time much faster.

This the backend used by the LTTng kernel plugin. It offers good scalability and
performance, even at extreme sizes (it's been tested with traces of sizes up to
500 GB). Its main downside is the amount of disk space required: since every
single interval is written to disk, the size of the history file can quite
easily reach and even surpass the size of the trace itself.

=== Null history ===

Available with TmfStateSystemFactory#newNullHistory(). As its name implies the
null history is in fact an absence of state history. All its query methods will
return null (see the Javadoc in NullBackend).

Obviously, no file is required, and almost no memory space is used.

It's meant to be used in cases where you are not interested in past states, but
only in the "ongoing" one. It can also be useful for debugging and benchmarking.

=== In-memory history ===

Available with TmfStateSystemFactory#newInMemHistory(). This is a simple wrapper
using a TreeSet to store all state intervals in memory. The implementation at
the moment is quite simple, it will perform a binary search on entries when
doing queries to find the ones that match.

The advantage of this method is that it's very quick to build and query, since
all the information resides in memory. However, you are limited to 2^31 entries
(roughly 2 billions), and depending on your state provider and trace type, that
can happen really fast!

There are no safeguards, so if you bust the limit you will end up with
ArrayOutOfBoundsException's everywhere. If your trace or state history can be
arbitrarily big, it's probably safer to use a Full History instead.

=== Partial history ===

Available with TmfStateSystemFactory#newPartialHistory(). The partial history is
a more advanced form of the full history. Instead of writing all state intervals
to disk like with the full history, we only write a small fraction of them, and
go back to read the trace to recreate the states in-between.

It has a big advantage over a full history in terms of disk space usage. It's
very possible to reduce the history tree file size by a factor of 1000, while
keeping query times within a factor of two. Its main downside comes from the
fact that you cannot do efficient single queries with it (they are implemented
by doing full queries underneath).

This makes it a poor choice for views like the Control Flow view, where you do
a lot of range queries and single queries. However, it is a perfect fit for
cases like statistics, where you usually do full queries already, and you store
lots of small states which are very easy to "compress".

However, it can't really be used until bug 409630 is fixed.

== State System Operations ==

TmfStateSystemOperations is a static class that implements additional
statistical operations that can be performed on attributes of the state system.

These operations require that the attribute be one of the numerical values
(int, long or double).

The speed of these operations can be greatly improved for large data sets if
the attribute was inserted in the state system as a mipmap attribute. Refer to
the [[#Mipmap feature | Mipmap feature]] section.

===== queryRangeMax() =====

This method returns the maximum numerical value of an attribute in the
specified time range. The attribute must be of type int, long or double.
Null values are ignored. The returned value will be of the same state value
type as the base attribute, or a null value if there is no state interval
stored in the given time range.

===== queryRangeMin() =====

This method returns the minimum numerical value of an attribute in the
specified time range. The attribute must be of type int, long or double.
Null values are ignored. The returned value will be of the same state value
type as the base attribute, or a null value if there is no state interval
stored in the given time range.

===== queryRangeAverage() =====

This method returns the average numerical value of an attribute in the
specified time range. The attribute must be of type int, long or double.
Each state interval value is weighted according to time. Null values are
counted as zero. The returned value will be a double primitive, which will
be zero if there is no state interval stored in the given time range.

== Code example ==

Here is a small example of code that will use the state system. For this
example, let's assume we want to track the state of all the CPUs in a LTTng
kernel trace. To do so, we will watch for the "sched_switch" event in the state
provider, and will update an attribute indicating if the associated CPU should
be set to "running" or "idle".

We will use an attribute tree that looks like this:
<pre>
CPUs
 |--0
 |  |--Status
 |
 |--1
 |  |--Status
 |
 |  2
 |  |--Status
...
</pre>

The second-level attributes will be named from the information available in the
trace events. Only the "Status" attributes will carry a state value (this means
we could have just used "1", "2", "3",... directly, but we'll do it in a tree
for the example's sake).

Also, we will use integer state values to represent "running" or "idle", instead
of saving the strings that would get repeated every time. This will help in
reducing the size of the history file.

First we will define a state provider in MyStateProvider. Then, we define an
analysis module that takes care of creating the state provider. The analysis
module will also contain code that can query the state system.

=== State Provider ===

<pre>
import java.util.Objects;

import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.tracecompass.statesystem.core.ITmfStateSystemBuilder;
import org.eclipse.tracecompass.tmf.core.event.ITmfEvent;
import org.eclipse.tracecompass.tmf.core.event.aspect.TmfCpuAspect;
import org.eclipse.tracecompass.tmf.core.statesystem.AbstractTmfStateProvider;
import org.eclipse.tracecompass.tmf.core.statesystem.ITmfStateProvider;
import org.eclipse.tracecompass.tmf.core.trace.ITmfTrace;
import org.eclipse.tracecompass.tmf.core.trace.TmfTraceUtils;

/**
 * An example of a simple state provider for a simple state system analysis
 *
 * @author Alexandre Montplaisir
 * @author Geneviève Bastien
 */
public class ExampleStateProvider extends AbstractTmfStateProvider {

    private static final @NonNull String PROVIDER_ID = "org.eclipse.tracecompass.examples.state.provider"; //$NON-NLS-1$
    private static final int VERSION = 0;

    /**
     * Constructor
     *
     * @param trace
     *            The trace for this state provider
     */
    public ExampleStateProvider(@NonNull ITmfTrace trace) {
        super(trace, PROVIDER_ID);
    }

    @Override
    public int getVersion() {
        return VERSION;
    }

    @Override
    public @NonNull ITmfStateProvider getNewInstance() {
        return new ExampleStateProvider(getTrace());
    }

    @Override
    protected void eventHandle(ITmfEvent event) {

        /**
         * Do what needs to be done with this event, here is an example that
         * updates the CPU state and TID after a sched_switch
         */
        if (event.getName().equals("sched_switch")) { //$NON-NLS-1$

            final long ts = event.getTimestamp().getValue();
            Long nextTid = event.getContent().getFieldValue(Long.class, "next_tid"); //$NON-NLS-1$
            Integer cpu = TmfTraceUtils.resolveIntEventAspectOfClassForEvent(event.getTrace(), TmfCpuAspect.class, event);
            if (cpu == null || nextTid == null) {
                return;
            }

            ITmfStateSystemBuilder ss = Objects.requireNonNull(getStateSystemBuilder());
            int quark = ss.getQuarkAbsoluteAndAdd("CPUs", String.valueOf(cpu)); //$NON-NLS-1$

            // The status attribute has an integer value
            int statusQuark = ss.getQuarkRelativeAndAdd(quark, "Status"); //$NON-NLS-1$
            Integer value = (nextTid > 0 ? 1 : 0);
            ss.modifyAttribute(ts, value, statusQuark);

            // The main quark contains the tid of the running thread
            ss.modifyAttribute(ts, nextTid, quark);
        }
    }

}

</pre>

=== Analysis module definition ===

<pre>
import java.util.Objects;

import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.tracecompass.tmf.core.statesystem.ITmfStateProvider;
import org.eclipse.tracecompass.tmf.core.statesystem.TmfStateSystemAnalysisModule;

/**
 * An example of a simple state system analysis module.
 *
 * @author Geneviève Bastien
 */
public class ExampleStateSystemAnalysisModule extends TmfStateSystemAnalysisModule {

    /**
     * Module ID
     */
    public static final String ID = "org.eclipse.tracecompass.examples.state.system.module"; //$NON-NLS-1$

    @Override
    protected @NonNull ITmfStateProvider createStateProvider() {
        return new ExampleStateProvider(Objects.requireNonNull(getTrace()));
    }

}
</pre>

== Mipmap feature ==

The mipmap feature allows attributes to be inserted into the state system with
additional computations performed to automatically store sub-attributes that
can later be used for statistical operations. The mipmap has a resolution which
represents the number of state attribute changes that are used to compute the
value at the next mipmap level.

The supported mipmap features are: max, min, and average. Each one of these
features requires that the base attribute be a numerical state value (int, long
or double). An attribute can be mipmapped for one or more of the features at
the same time.

To use a mipmapped attribute in queries, call the corresponding methods of the
static class [[#State System Operations | TmfStateSystemOperations]].

=== AbstractTmfMipmapStateProvider ===

AbstractTmfMipmapStateProvider is an abstract provider class that allows adding
features to a specific attribute into a mipmap tree. It extends AbstractTmfStateProvider.

If a provider wants to add mipmapped attributes to its tree, it must extend
AbstractTmfMipmapStateProvider and call modifyMipmapAttribute() in the event
handler, specifying one or more mipmap features to compute. Then the structure
of the attribute tree will be:

<pre>
|- <attribute>
|   |- <mipmapFeature> (min/max/avg)
|   |   |- 1
|   |   |- 2
|   |   |- 3
|   |  ...
|   |   |- n (maximum mipmap level)
|   |- <mipmapFeature> (min/max/avg)
|   |   |- 1
|   |   |- 2
|   |   |- 3
|   |  ...
|   |   |- n (maximum mipmap level)
|  ...
</pre>

= UML2 Sequence Diagram Framework =

The purpose of the UML2 Sequence Diagram Framework of TMF is to provide a framework for generation of UML2 sequence diagrams. It provides 
*UML2 Sequence diagram drawing capabilities (i.e. lifelines, messages, activations, object creation and deletion)
*a generic, re-usable Sequence Diagram View 
*Eclipse Extension Point for the creation of sequence diagrams 
*callback hooks for searching and filtering within the Sequence Diagram View
*scalability<br>
The following chapters describe the Sequence Diagram Framework as well as a reference implementation and its usage.

== TMF UML2 Sequence Diagram Extensions ==

In the UML2 Sequence Diagram Framework an Eclipse extension point is defined so that other plug-ins can contribute code to create sequence diagram. 

'''Identifier''': org.eclipse.linuxtools.tmf.ui.uml2SDLoader<br>
'''Description''': This extension point aims to list and connect any UML2 Sequence Diagram loader.<br>
'''Configuration Markup''':<br>

<pre>
<!ELEMENT extension (uml2SDLoader)+>
<!ATTLIST extension
point CDATA #REQUIRED
id    CDATA #IMPLIED
name  CDATA #IMPLIED
>
</pre>

*point - A fully qualified identifier of the target extension point.
*id - An optional identifier of the extension instance.
*name - An optional name of the extension instance.

<pre>
<!ELEMENT uml2SDLoader EMPTY>
<!ATTLIST uml2SDLoader
id      CDATA #REQUIRED
name    CDATA #REQUIRED
class   CDATA #REQUIRED
view    CDATA #REQUIRED
default (true | false)
</pre>

*id - A unique identifier for this uml2SDLoader. This is not mandatory as long as the id attribute cannot be retrieved by the provider plug-in. The class attribute is the one on which the underlying algorithm relies.
*name - An name of the extension instance.
*class - The implementation of this UML2 SD viewer loader. The class must implement org.eclipse.tracecompass.tmf.ui.views.uml2sd.load.IUml2SDLoader.
*view - The view ID of the view that this loader aims to populate. Either org.eclipse.tracecompass.tmf.ui.views.uml2sd.SDView itself or a extension of org.eclipse.tracecompass.tmf.ui.views.uml2sd.SDView.
*default - Set to true to make this loader the default one for the view; in case of several default loaders, first one coming from extensions list is taken.


== Management of the Extension Point  ==

The TMF UI plug-in is responsible for evaluating each contribution to the extension point. 
<br>
<br>
With this extension point, a loader class is associated with a Sequence Diagram View. Multiple loaders can be associated to a single Sequence Diagram View. However, additional means have to be implemented to specify which loader should be used when opening the view. For example, an eclipse action or command could be used for that. This additional code is not necessary if there is only one loader for a given Sequence Diagram View associated and this loader has the attribute "default" set to "true". (see also [[#Using one Sequence Diagram View with Multiple Loaders | Using one Sequence Diagram View with Multiple Loaders]])

== Sequence Diagram View  ==

For this extension point a Sequence Diagram View has to be defined as well. The Sequence Diagram View class implementation is provided by the plug-in ''org.eclipse.tracecompass.tmf.ui'' (''org.eclipse.tracecompass.tmf.ui.views.uml2sd.SDView'') and can be used as is or can also be sub-classed. For that, a view extension has to be added to the ''plugin.xml''.

=== Supported Widgets  ===

The loader class provides a frame containing all the UML2 widgets to be displayed. The following widgets exist:

*Lifeline
*Activation
*Synchronous Message 
*Asynchronous Message 
*Synchronous Message Return 
*Asynchronous Message Return
*Stop

For a lifeline, a category can be defined. The lifeline category defines icons, which are displayed in the lifeline header.

=== Zooming  ===

The Sequence Diagram View allows the user to zoom in, zoom out and reset the zoom factor.

=== Printing  ===

It is possible to print the whole sequence diagram as well as part of it.  

=== Key Bindings ===

*SHIFT+ALT+ARROW-DOWN - to scroll down within sequence diagram one view page at a time
*SHIFT+ALT+ARROW-UP - to scroll up within sequence diagram one view page at a time
*SHIFT+ALT+ARROW-RIGHT - to scroll right within sequence diagram one view page at a time
*SHIFT+ALT+ARROW-LEFT - to scroll left within sequence diagram one view page at a time
*SHIFT+ALT+ARROW-HOME - to jump to the beginning of the selected message if not already visible in page
*SHIFT+ALT+ARROW-END - to jump to the end of the selected message if not already visible in page
*CTRL+F - to open find dialog if either the basic or extended find provider is defined (see [[#Using the Find Provider Interface | Using the Find Provider Interface]])
*CTRL+P - to open print dialog 

=== Preferences ===

The UML2 Sequence Diagram Framework provides preferences to customize the appearance of the Sequence Diagram View. The color of all widgets and text as well as the fonts of the text of all widget can be adjust. Amongst others the default lifeline width can be alternated. To change preferences select '''Windows->Preferences->Tracing->UML2 Sequence Diagrams'''. The following preference page will show:<br>
[[Image:images/SeqDiagramPref.png]]  <br>
After changing the preferences select '''OK'''.

=== Callback hooks ===

The Sequence Diagram View provides several callback hooks so that extension can provide application specific functionality. The following interfaces can be provided:
* Basic find provider or extended find Provider<br> For finding within the sequence diagram
* Basic filter provider and extended Filter Provider<br> For filtering within the sequnce diagram.
* Basic paging provider or advanced paging provider<br> For scalability reasons, used to limit number of displayed messages
* Properies provider<br> To provide properties of selected elements
* Collapse provider <br> To collapse areas of the sequence diagram

== Tutorial  ==

This tutorial describes how to create a UML2 Sequence Diagram Loader extension and use this loader in the in Eclipse. 

=== Prerequisites ===

The tutorial is based on Eclipse 4.4 (Eclipse Luna) and TMF 3.0.0.

=== Creating an Eclipse UI Plug-in ===

To create a new project with name org.eclipse.tracecompass.tmf.sample.ui select '''File -> New -> Project -> Plug-in Development -> Plug-in Project'''. <br>
[[Image:images/Screenshot-NewPlug-inProject1.png]]<br>

[[Image:images/Screenshot-NewPlug-inProject2.png]]<br>

[[Image:images/Screenshot-NewPlug-inProject3.png]]<br>

=== Creating a Sequence Diagram View ===

To open the plug-in manifest, double-click on the MANIFEST.MF file. <br>
[[Image:images/SelectManifest.png]]<br>

Change to the Dependencies tab and select '''Add...''' of the ''Required Plug-ins'' section. A new dialog box will open. Next find plug-ins ''org.eclipse.tracecompass.tmf.ui'' and ''org.eclipse.tracecompass.tmf.core'' and then press '''OK'''<br>
[[Image:images/AddDependencyTmfUi.png]]<br>

Change to the Extensions tab and select '''Add...''' of the ''All Extension'' section. A new dialog box will open. Find the view extension ''org.eclipse.ui.views'' and press '''Finish'''.<br> 
[[Image:images/AddViewExtension1.png]]<br>
 
To create a Sequence Diagram View, click the right mouse button. Then select '''New -> view'''<br>
[[Image:images/AddViewExtension2.png]]<br>

A new view entry has been created. Fill in the  fields ''id'', ''name'' and ''class''. Note that for ''class'' the SD view implementation (''org.eclipse.tracecompass.tmf.ui.views.SDView'') of the TMF UI plug-in is used.<br>
[[Image:images/FillSampleSeqDiagram.png]]<br>

The view is prepared. Run the Example. To launch the an Eclipse Application select the ''Overview'' tab and click on '''Launch an Eclipse Application'''<br>
[[Image:images/RunEclipseApplication.png]]<br>

A new Eclipse application window will show. In the new window go to '''Windows -> Show View -> Other... -> Other -> Sample Sequence Diagram'''.<br> 
[[Image:images/ShowViewOther.png]]<br>

The Sequence Diagram View will open with an blank page.<br>
[[Image:images/BlankSampleSeqDiagram.png]]<br>

Close the Example Application.

=== Defining the uml2SDLoader Extension ===

After defining the Sequence Diagram View it's time to create the ''uml2SDLoader'' Extension. <br>

To create the loader extension, change to the Extensions tab and select '''Add...''' of the ''All Extension'' section. A new dialog box will open. Find the extension ''org.eclipse.linuxtools.tmf.ui.uml2SDLoader'' and press '''Finish'''.<br>
[[Image:images/AddTmfUml2SDLoader.png]]<br>

A new 'uml2SDLoader'' extension has been created. Fill in fields ''id'', ''name'', ''class'', ''view'' and ''default''. Use ''default'' equal true for this example. For the view add the id of the Sequence Diagram View of chapter [[#Creating a Sequence Diagram View | Creating a Sequence Diagram View]]. <br>
[[Image:images/FillSampleLoader.png]]<br>

Then click on ''class'' (see above) to open the new class dialog box. Fill in the relevant fields and select '''Finish'''. <br>
[[Image:images/NewSampleLoaderClass.png]]<br>

A new Java class will be created which implements the interface ''org.eclipse.tracecompass.tmf.ui.views.uml2sd.load.IUml2SDLoader''.<br>

<pre>
package org.eclipse.tracecompass.tmf.sample.ui;

import org.eclipse.tracecompass.tmf.ui.views.uml2sd.SDView;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.load.IUml2SDLoader;

public class SampleLoader implements IUml2SDLoader {

    public SampleLoader() {
        // TODO Auto-generated constructor stub
    }

    @Override
    public void dispose() {
        // TODO Auto-generated method stub

    }

    @Override
    public String getTitleString() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public void setViewer(SDView arg0) {
        // TODO Auto-generated method stub

    }
</pre>

=== Implementing the Loader Class  ===

Next is to implement the methods of the IUml2SDLoader interface method. The following code snippet shows how to create the major sequence diagram elements. Please note that no time information is stored.<br>

<pre>
package org.eclipse.tracecompass.tmf.sample.ui;

import org.eclipse.tracecompass.tmf.ui.views.uml2sd.SDView;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.AsyncMessage;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.AsyncMessageReturn;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.EllipsisMessage;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.ExecutionOccurrence;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.Frame;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.Lifeline;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.Stop;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.SyncMessage;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.core.SyncMessageReturn;
import org.eclipse.tracecompass.tmf.ui.views.uml2sd.load.IUml2SDLoader;

public class SampleLoader implements IUml2SDLoader {

    private SDView fSdView;
    
    public SampleLoader() {
    }

    @Override
    public void dispose() {
    }

    @Override
    public String getTitleString() {
        return "Sample Diagram";
    }

    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        createFrame();
    }
    
    private void createFrame() {

        Frame testFrame = new Frame();
        testFrame.setName("Sample Frame");

        /*
         *  Create lifelines
         */
        
        Lifeline lifeLine1 = new Lifeline();
        lifeLine1.setName("Object1");
        testFrame.addLifeLine(lifeLine1);
        
        Lifeline lifeLine2 = new Lifeline();
        lifeLine2.setName("Object2");
        testFrame.addLifeLine(lifeLine2);
        

        /*
         * Create Sync Message
         */
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        
        // Get Sync message instances
        SyncMessage start = new SyncMessage();
        start.setName("Start");
        start.setEndLifeline(lifeLine1);
        testFrame.addMessage(start);

        /*
         * Create Sync Message
         */
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        lifeLine2.getNewEventOccurrence();
        
        // Get Sync message instances
        SyncMessage syn1 = new SyncMessage();
        syn1.setName("Sync Message 1");
        syn1.setStartLifeline(lifeLine1);
        syn1.setEndLifeline(lifeLine2);
        testFrame.addMessage(syn1);

        /*
         * Create corresponding Sync Message Return
         */
        
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        lifeLine2.getNewEventOccurrence();

        SyncMessageReturn synReturn1 = new SyncMessageReturn();
        synReturn1.setName("Sync Message Return 1");
        synReturn1.setStartLifeline(lifeLine2);
        synReturn1.setEndLifeline(lifeLine1);
        synReturn1.setMessage(syn1);
        testFrame.addMessage(synReturn1);
        
        /*
         * Create Activations (Execution Occurrence)
         */
        ExecutionOccurrence occ1 = new ExecutionOccurrence();
        occ1.setStartOccurrence(start.getEventOccurrence());
        occ1.setEndOccurrence(synReturn1.getEventOccurrence());
        lifeLine1.addExecution(occ1);
        occ1.setName("Activation 1");
        
        ExecutionOccurrence occ2 = new ExecutionOccurrence();
        occ2.setStartOccurrence(syn1.getEventOccurrence());
        occ2.setEndOccurrence(synReturn1.getEventOccurrence());
        lifeLine2.addExecution(occ2);
        occ2.setName("Activation 2");
        
        /*
         * Create Sync Message
         */
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        lifeLine2.getNewEventOccurrence();
        
        // Get Sync message instances
        AsyncMessage asyn1 = new AsyncMessage();
        asyn1.setName("Async Message 1");
        asyn1.setStartLifeline(lifeLine1);
        asyn1.setEndLifeline(lifeLine2);
        testFrame.addMessage(asyn1);

        /*
         * Create corresponding Sync Message Return
         */
        
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        lifeLine2.getNewEventOccurrence();

        AsyncMessageReturn asynReturn1 = new AsyncMessageReturn();
        asynReturn1.setName("Async Message Return 1");
        asynReturn1.setStartLifeline(lifeLine2);
        asynReturn1.setEndLifeline(lifeLine1);
        asynReturn1.setMessage(asyn1);
        testFrame.addMessage(asynReturn1);
        
        /*
         * Create a note 
         */
        
        // Get new occurrence on lifelines
        lifeLine1.getNewEventOccurrence();
        
        EllipsisMessage info = new EllipsisMessage();
        info.setName("Object deletion");
        info.setStartLifeline(lifeLine2);
        testFrame.addNode(info);
        
        /*
         * Create a Stop
         */
        Stop stop = new Stop();
        stop.setLifeline(lifeLine2);
        stop.setEventOccurrence(lifeLine2.getNewEventOccurrence());
        lifeLine2.addNode(stop);
        
        fSdView.setFrame(testFrame);
    }
}
</pre>

Now it's time to run the example application. To launch the Example Application select the ''Overview'' tab and click on '''Launch an Eclipse Application'''<br>
[[Image:images/SampleDiagram1.png]] <br>

=== Adding time information ===

To add time information in sequence diagram the timestamp has to be set for each message. The sequence diagram framework uses the ''TmfTimestamp'' class of plug-in ''org.eclipse.tracecompass.tmf.core''. Use ''setTime()'' on each message ''SyncMessage'' since start and end time are the same. For each ''AsyncMessage'' set start and end time separately by using methods ''setStartTime'' and ''setEndTime''. For example: <br>

<pre>
    private void createFrame() {
        //...
        start.setTime(TmfTimestamp.create(1000, -3));
        syn1.setTime(TmfTimestamp.create(1005, -3));
        synReturn1.setTime(TmfTimestamp.create(1050, -3));
        asyn1.setStartTime(TmfTimestamp.create(1060, -3));
        asyn1.setEndTime(TmfTimestamp.create(1070, -3));
        asynReturn1.setStartTime(TmfTimestamp.create(1060, -3));
        asynReturn1.setEndTime(TmfTimestamp.create(1070, -3));
        //...
    }
</pre>

When running the example application, a time compression bar on the left appears which indicates the time elapsed between consecutive events. The time compression scale shows where the time falls between the minimum and maximum delta times. The intensity of the color is used to indicate the length of time, namely, the deeper the intensity, the higher the delta time. The minimum and maximum delta times are configurable through the collbar menu ''Configure Min Max''. The time compression bar and scale may provide an indication about which events consumes the most time. By hovering over the time compression bar a tooltip appears containing more information. <br>

[[Image:images/SampleDiagramTimeComp.png]] <br>

By hovering over a message it will show the time information in the appearing tooltip. For each ''SyncMessage'' it shows its time occurrence and for each ''AsyncMessage'' it shows the start and end time.

[[Image:images/SampleDiagramSyncMessage.png]] <br>
[[Image:images/SampleDiagramAsyncMessage.png]] <br>

To see the time elapsed between 2 messages, select one message and hover over a second message. A tooltip will show with the delta in time. Note if the second message is before the first then a negative delta is displayed. Note that for ''AsyncMessage'' the end time is used for the delta calculation.<br>
[[Image:images/SampleDiagramMessageDelta.png]] <br>

=== Default Coolbar and Menu Items ===

The Sequence Diagram View comes with default coolbar and menu items. By default, each sequence diagram shows the following actions:
* Zoom in
* Zoom out
* Reset Zoom Factor 
* Selection
* Configure Min Max (drop-down menu only)
* Navigation -> Show the node end (drop-down menu only)
* Navigation -> Show the node start (drop-down menu only)

[[Image:images/DefaultCoolbarMenu.png]]<br>

=== Implementing Optional Callbacks ===

The following chapters describe how to use all supported provider interfaces.

==== Using the Paging Provider Interface ==== 

For scalability reasons, the paging provider interfaces exists to limit the number of messages displayed in the Sequence Diagram View at a time. For that, two interfaces exist, the basic paging provider and the advanced paging provider. When using the basic paging interface, actions for traversing page by page through the sequence diagram of a trace will be provided. 
<br>
To use the basic paging provider, first the interface methods of the ''ISDPagingProvider'' have to be implemented by a class. (i.e. ''hasNextPage()'', ''hasPrevPage()'', ''nextPage()'', ''prevPage()'', ''firstPage()'' and ''endPage()''. Typically, this is implemented in the loader class. Secondly, the provider has to be set in the Sequence Diagram View. This will be done in the ''setViewer()'' method of the loader class. Lastly, the paging provider has to be removed from the view, when the ''dispose()'' method of the loader class is called.      

<pre>
public class SampleLoader implements IUml2SDLoader, ISDPagingProvider {
    //...
    private int page = 0;
    
    @Override
    public void dispose() {
        if (fSdView != null) {
            fSdView.resetProviders();
        }
    }
    
    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        fSdView.setSDPagingProvider(this);
        createFrame();
    }
    
    private void createSecondFrame() {
        Frame testFrame = new Frame();
        testFrame.setName("SecondFrame");
        Lifeline lifeline = new Lifeline();
        lifeline.setName("LifeLine 0");
        testFrame.addLifeLine(lifeline);
        lifeline = new Lifeline();
        lifeline.setName("LifeLine 1");
        testFrame.addLifeLine(lifeline);
        for (int i = 1; i < 5; i++) {
            SyncMessage message = new SyncMessage();
            message.autoSetStartLifeline(testFrame.getLifeline(0));
            message.autoSetEndLifeline(testFrame.getLifeline(0));
            message.setName((new StringBuilder("Message ")).append(i).toString());
            testFrame.addMessage(message);
            
            SyncMessageReturn messageReturn = new SyncMessageReturn();
            messageReturn.autoSetStartLifeline(testFrame.getLifeline(0));
            messageReturn.autoSetEndLifeline(testFrame.getLifeline(0));
            
            testFrame.addMessage(messageReturn);
            messageReturn.setName((new StringBuilder("Message return ")).append(i).toString());
            ExecutionOccurrence occ = new ExecutionOccurrence();
            occ.setStartOccurrence(testFrame.getSyncMessage(i - 1).getEventOccurrence());
            occ.setEndOccurrence(testFrame.getSyncMessageReturn(i - 1).getEventOccurrence());
            testFrame.getLifeline(0).addExecution(occ);
        }
        fSdView.setFrame(testFrame);
    }

    @Override
    public boolean hasNextPage() {
        return page == 0;
    }

    @Override
    public boolean hasPrevPage() {
        return page == 1;
    }

    @Override
    public void nextPage() {
        page = 1;
        createSecondFrame();
    }

    @Override
    public void prevPage() {
        page = 0;
        createFrame();
    }

    @Override
    public void firstPage() {
        page = 0;
        createFrame();
    }

    @Override
    public void lastPage() {
        page = 1;
        createSecondFrame();
    }
    //...
}

</pre>

When running the example application, new actions will be shown in the coolbar and the coolbar menu. <br>

[[Image:images/PageProviderAdded.png]]

<br><br>
To use the advanced paging provider, the interface ''ISDAdvancePagingProvider'' has to be implemented. It extends the basic paging provider. The methods ''currentPage()'', ''pagesCount()'' and ''pageNumberChanged()'' have to be added. 
<br>  
 
==== Using the Find Provider Interface ====

For finding nodes in a sequence diagram two interfaces exists. One for basic finding and one for extended finding. The basic find comes with a dialog box for entering find criteria as regular expressions. This find criteria can be used to execute the find. Find criteria a persisted in the Eclipse workspace.
<br>
For the extended find provider interface a ''org.eclipse.jface.action.Action'' class has to be provided. The actual find handling has to be implemented and triggered by the action.
<br>
Only on at a time can be active. If the extended find provder is defined it obsoletes the basic find provider.
<br>
To use the basic find provider, first the interface methods of the ''ISDFindProvider'' have to be implemented by a class. Typically, this is implemented in the loader class. Add the ISDFindProvider to the list of implemented interfaces, implement the methods ''find()'' and ''cancel()'' and set the provider in the ''setViewer()'' method as well as remove the provider in the ''dispose()'' method of the loader class. Please note that the ''ISDFindProvider'' extends the interface ''ISDGraphNodeSupporter'' which methods (''isNodeSupported()'' and ''getNodeName()'') have to be implemented, too. The following shows an example implementation. Please note that only search for lifelines and SynchMessage are supported. The find itself will always find only the first occurrence the pattern to match.  

<pre>
public class SampleLoader implements IUml2SDLoader, ISDPagingProvider, ISDFindProvider {

    //...
    @Override
    public void dispose() {
        if (fSdView != null) {
            fSdView.resetProviders();
        }
    }

    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        fSdView.setSDPagingProvider(this);
        fSdView.setSDFindProvider(this);
        createFrame();
    }

    @Override
    public boolean isNodeSupported(int nodeType) {
        switch (nodeType) {
        case ISDGraphNodeSupporter.LIFELINE:
        case ISDGraphNodeSupporter.SYNCMESSAGE:
            return true;

        default:
            break;
        }
        return false;
    }

    @Override
    public String getNodeName(int nodeType, String loaderClassName) {
        switch (nodeType) {
        case ISDGraphNodeSupporter.LIFELINE:
            return "Lifeline";
        case ISDGraphNodeSupporter.SYNCMESSAGE:
            return "Sync Message";
        }
        return "";
    }

    @Override
    public boolean find(Criteria criteria) {
        Frame frame = fSdView.getFrame();
        if (criteria.isLifeLineSelected()) {
            for (int i = 0; i < frame.lifeLinesCount(); i++) {
                if (criteria.matches(frame.getLifeline(i).getName())) {
                    fSdView.getSDWidget().moveTo(frame.getLifeline(i));
                    return true;
                }
            }
        }
        if (criteria.isSyncMessageSelected()) {
            for (int i = 0; i < frame.syncMessageCount(); i++) {
                if (criteria.matches(frame.getSyncMessage(i).getName())) {
                    fSdView.getSDWidget().moveTo(frame.getSyncMessage(i));
                    return true;
                }
            }
        }
        return false;
    }

    @Override
    public void cancel() {
        // reset find parameters
    }
    //...
}
</pre>

When running the example application, the find action will be shown in the coolbar and the coolbar menu. <br>
[[Image:images/FindProviderAdded.png]]

To find a sequence diagram node press on the find button of the coolbar (see above). A new dialog box will open. Enter a regular expression in the ''Matching String'' text box, select the node types (e.g. Sync Message) and press '''Find'''. If found the corresponding node will be selected. If not found the dialog box will indicate not found. <br> 
[[Image:images/FindDialog.png]]<br>

Note that the find dialog will be opened by typing the key shortcut CRTL+F.

==== Using the Filter Provider Interface ====

For filtering of sequence diagram elements two interfaces exist. One basic for filtering and one for extended filtering. The basic filtering comes with two dialog for entering filter criteria as regular expressions and one for selecting the filter to be used. Multiple filters can be active at a time. Filter criteria are persisted in the Eclipse workspace.
<br>
To use the basic filter provider, first the interface method of the ''ISDFilterProvider'' has to be implemented by a class. Typically, this is implemented in the loader class. Add the ''ISDFilterProvider'' to the list of implemented interfaces, implement the method ''filter()''and set the provider in the ''setViewer()'' method as well as remove the provider in the ''dispose()'' method of the loader class. Please note that the ''ISDFindProvider'' extends the interface ''ISDGraphNodeSupporter'' which methods (''isNodeSupported()'' and ''getNodeName()'') have to be implemented, too. <br>
Note that no example implementation of ''filter()'' is provided. 
<br>

<pre>
public class SampleLoader implements IUml2SDLoader, ISDPagingProvider, ISDFindProvider, ISDFilterProvider {

    //...
    @Override
    public void dispose() {
        if (fSdView != null) {
            fSdView.resetProviders();
        }
    }

    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        fSdView.setSDPagingProvider(this);
        fSdView.setSDFindProvider(this);
        fSdView.setSDFilterProvider(this);
        createFrame();
    }

    @Override
    public boolean filter(List<FilterCriteria> list) {
        return false;
    }
    //...
}
</pre>

When running the example application, the filter action will be shown in the coolbar menu. <br>
[[Image:images/HidePatternsMenuItem.png]]

To filter select the '''Hide Patterns...''' of the coolbar menu. A new dialog box will open. <br>
[[Image:images/DialogHidePatterns.png]] 

To Add a new filter press '''Add...'''. A new dialog box will open. Enter a regular expression in the ''Matching String'' text box, select the node types (e.g. Sync Message) and press '''Create''''. <br> 
[[Image:images/DialogHidePatterns.png]] <br>

Now back at the Hide Pattern dialog. Select one or more filter and select '''OK'''.

To use the extended filter provider, the interface ''ISDExtendedFilterProvider'' has to be implemented. It will provide a ''org.eclipse.jface.action.Action'' class containing the actual filter handling and filter algorithm.

==== Using the Extended Action Bar Provider Interface ====

The extended action bar provider can be used to add customized actions to the Sequence Diagram View. 
To use the extended action bar provider, first the interface method of the interface ''ISDExtendedActionBarProvider'' has to be implemented by a class. Typically, this is implemented in the loader class. Add the ''ISDExtendedActionBarProvider'' to the list of implemented interfaces, implement the method ''supplementCoolbarContent()'' and set the provider in the ''setViewer()'' method as well as remove the provider in the ''dispose()'' method of the loader class. <br>

<pre>
public class SampleLoader implements IUml2SDLoader, ISDPagingProvider, ISDFindProvider, ISDFilterProvider, ISDExtendedActionBarProvider {
    //...
    
    @Override
    public void dispose() {
        if (fSdView != null) {
            fSdView.resetProviders();
        }
    }

    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        fSdView.setSDPagingProvider(this);
        fSdView.setSDFindProvider(this);
        fSdView.setSDFilterProvider(this);
        fSdView.setSDExtendedActionBarProvider(this);
        createFrame();
    }

    @Override
    public void supplementCoolbarContent(IActionBars iactionbars) {
        Action action = new Action("Refresh") {
            @Override
            public void run() {
                System.out.println("Refreshing...");
            }
        };
        iactionbars.getMenuManager().add(action);
        iactionbars.getToolBarManager().add(action);
    }
    //...
}
</pre>

When running the example application, all new actions will be added to the coolbar and coolbar menu according to the implementation of ''supplementCoolbarContent()''<br>.
For the example above the coolbar and coolbar menu will look as follows.

[[Image:images/SupplCoolbar.png]]

==== Using the Properties Provider Interface====

This interface can be used to provide property information. A property provider which returns an ''IPropertyPageSheet'' (see ''org.eclipse.ui.views'') has to be implemented and set in the Sequence Diagram View. <br>

To use the property provider, first the interface method of the ''ISDPropertiesProvider'' has to be implemented by a class. Typically, this is implemented in the loader class. Add the ''ISDPropertiesProvider'' to the list of implemented interfaces, implement the method ''getPropertySheetEntry()'' and set the provider in the ''setViewer()'' method as well as remove the provider in the ''dispose()'' method of the loader class. Please note that no example is provided here.

Please refer to the following Eclipse articles for more information about properties and tabed properties.
*[http://www.eclipse.org/articles/Article-Properties-View/properties-view.html | Take control of your properties]
*[http://www.eclipse.org/articles/Article-Tabbed-Properties/tabbed_properties_view.html | The Eclipse Tabbed Properties View]

==== Using the Collapse Provider Interface ====

This interface can be used to define a provider which responsibility is to collapse two selected lifelines. This can be used to hide a pair of lifelines.

To use the collapse provider, first the interface method of the ''ISDCollapseProvider'' has to be implemented by a class. Typically, this is implemented in the loader class. Add the ISDCollapseProvider to the list of implemented interfaces, implement the method ''collapseTwoLifelines()'' and set the provider in the ''setViewer()'' method as well as remove the provider in the ''dispose()'' method of the loader class. Please note that no example is provided here.

==== Using the Selection Provider Service ====

The Sequence Diagram View comes with a build in selection provider service. To this service listeners can be added. To use the selection provider service, the interface ''ISelectionListener'' of plug-in  ''org.eclipse.ui'' has to implemented. Typically this is implemented in loader class. Firstly, add the ''ISelectionListener'' interface to the list of implemented interfaces, implement the method ''selectionChanged()'' and set the listener in method ''setViewer()'' as well as remove the listener in the ''dispose()'' method of the loader class.

<pre>
public class SampleLoader implements IUml2SDLoader, ISDPagingProvider, ISDFindProvider, ISDFilterProvider, ISDExtendedActionBarProvider, ISelectionListener {

    //...
    @Override
    public void dispose() {
        if (fSdView != null) {
            PlatformUI.getWorkbench().getActiveWorkbenchWindow().getSelectionService().removePostSelectionListener(this);
            fSdView.resetProviders();
        }
    }

    @Override
    public String getTitleString() {
        return "Sample Diagram";
    }

    @Override
    public void setViewer(SDView arg0) {
        fSdView = arg0;
        PlatformUI.getWorkbench().getActiveWorkbenchWindow().getSelectionService().addPostSelectionListener(this);
        fSdView.setSDPagingProvider(this);
        fSdView.setSDFindProvider(this);
        fSdView.setSDFilterProvider(this);
        fSdView.setSDExtendedActionBarProvider(this);

        createFrame();
    }

    @Override
    public void selectionChanged(IWorkbenchPart part, ISelection selection) {
        ISelection sel = PlatformUI.getWorkbench().getActiveWorkbenchWindow().getSelectionService().getSelection();
        if (sel != null && (sel instanceof StructuredSelection)) {
            StructuredSelection stSel = (StructuredSelection) sel;
            if (stSel.getFirstElement() instanceof BaseMessage) {
                BaseMessage syncMsg = ((BaseMessage) stSel.getFirstElement());
                System.out.println("Message '" + syncMsg.getName() + "' selected.");
            }
        }
    }
    
    //...
}
</pre>

=== Printing a Sequence Diagram ===

To print a the whole sequence diagram or only parts of it, select the Sequence Diagram View and select '''File -> Print...''' or type the key combination ''CTRL+P''. A new print dialog will open. <br>

[[Image:images/PrintDialog.png]] <br>

Fill in all the relevant information, select '''Printer...''' to choose the printer and the press '''OK'''.

=== Using one Sequence Diagram View with Multiple Loaders ===

A Sequence Diagram View definition can be used with multiple sequence diagram loaders. However, the active loader to be used when opening the view has to be set. For this define an Eclipse action or command and assign the current loader to the view. Here is a code snippet for that:

<pre>
public class OpenSDView extends AbstractHandler {
    @Override
    public Object execute(ExecutionEvent event) throws ExecutionException {
        try {
            IWorkbenchPage persp = TmfUiPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage();
            SDView view = (SDView) persp.showView("org.eclipse.linuxtools.ust.examples.ui.componentinteraction");
            LoadersManager.getLoadersManager().createLoader("org.eclipse.tracecompass.tmf.ui.views.uml2sd.impl.TmfUml2SDSyncLoader", view);
        } catch (PartInitException e) {
            throw new ExecutionException("PartInitException caught: ", e);
        }
        return null;
 }
}
</pre>

=== Downloading the Tutorial ===

Use the following link to download the source code of the tutorial [https://wiki.eclipse.org/images/7/79/SamplePluginTC.zip Plug-in of Tutorial].

== Integration of Tracing and Monitoring Framework with Sequence Diagram Framework ==

In the previous sections the Sequence Diagram Framework has been described and a tutorial was provided. In the following sections the integration of the Sequence Diagram Framework with other features of TMF will be described. Together it is a powerful framework to analyze and visualize content of traces. The integration is explained using the reference implementation of a UML2 sequence diagram loader which part of the TMF UI delivery. The reference implementation can be used as is, can be sub-classed or simply be an example for other sequence diagram loaders to be implemented. 

=== Reference Implementation ===

A Sequence Diagram View Extension is defined in the plug-in TMF UI as well as a uml2SDLoader Extension with the reference loader. 

[[Image:images/ReferenceExtensions.png]]

=== Used Sequence Diagram Features ===

Besides the default features of the Sequence Diagram Framework, the reference implementation uses the following additional features:
*Advanced paging
*Basic finding
*Basic filtering
*Selection Service

==== Advanced paging ====

The reference loader implements the interface ''ISDAdvancedPagingProvider'' interface. Please refer to section [[#Using the Paging Provider Interface | Using the Paging Provider Interface]] for more details about the advanced paging feature.

==== Basic finding ====

The reference loader implements the interface ''ISDFindProvider'' interface. The user can search for ''Lifelines'' and ''Interactions''. The find is done across pages. If the expression to match is not on the current page a new thread is started to search on other pages. If expression is found the corresponding page is shown as well as the searched item is displayed. If not found then a message is displayed in the ''Progress View'' of Eclipse. Please refer to section [[#Using the Find Provider Interface | Using the Find Provider Interface]] for more details about the basic find feature.

==== Basic filtering ====

The reference loader implements the interface ''ISDFilterProvider'' interface. The user can filter on ''Lifelines'' and ''Interactions''. Please refer to section [[#Using the Filter Provider Interface | Using the Filter Provider Interface]] for more details about the basic filter feature.

==== Selection Service ====

The reference loader implements the interface ''ISelectionListener'' interface. When an interaction is selected a ''TmfTimeSynchSignal'' is broadcast (see [[#TMF Signal Framework | TMF Signal Framework]]). Please also refer to section [[#Using the Selection Provider Service | Using the Selection Provider Service]] for more details about the selection service and . 

=== Used TMF Features ===

The reference implementation uses the following features of TMF:
*TMF Experiment and Trace for accessing traces
*Event Request Framework to request TMF events from the experiment and respective traces
*Signal Framework for broadcasting and receiving TMF signals for synchronization purposes

==== TMF Experiment and Trace for accessing traces ====

The reference loader uses TMF Experiments to access traces and to request data from the traces.   

==== TMF Event Request Framework ====

The reference loader use the TMF Event Request Framework to request events from the experiment and its traces.

When opening a trace (which is triggered by signal ''TmfTraceSelectedSignal'') or when opening the Sequence Diagram View after a trace had been opened previously, a TMF background request is initiated to index the trace and to fill in the first page of the sequence diagram. The purpose of the indexing is to store time ranges for pages with 10000 messages per page. This allows quickly to move to certain pages in a trace without having to re-parse from the beginning. The request is called indexing request.

When switching pages, a TMF foreground event request is initiated to retrieve the corresponding events from the experiment. It uses the time range stored in the index for the respective page.

A third type of event request is issued for finding specific data across pages. 

==== TMF Signal Framework ====

The reference loader extends the class ''TmfComponent''. By doing that the loader is registered as a TMF signal handler for sending and receiving TMF signals. The loader implements signal handlers for the following TMF signals:
*''TmfTraceSelectedSignal''
This signal indicates that a trace or experiment was selected. When receiving this signal the indexing request is initiated and the first page is displayed after receiving the relevant information.
*''TmfTraceClosedSignal''
This signal indicates that a trace or experiment was closed. When receiving this signal the loader resets its data and a blank page is loaded in the Sequence Diagram View.
*''TmfTimeSynchSignal''
This signal is used to indicate that a new time or time range has been selected. It contains a begin and end time. If a single time is selected then the begin and end time are the same. When receiving this signal the corresponding message matching the begin time is selected in the Sequence Diagram View. If necessary, the page is changed.
*''TmfRangeSynchSignal''
This signal indicates that a new time range is in focus. When receiving this signal the loader loads the page which corresponds to the start time of the time range signal. The message with the start time will be in focus.

Besides acting on receiving signals, the reference loader is also sending signals. A ''TmfTimeSynchSignal'' is broadcasted with the timestamp of the message which was selected in the Sequence Diagram View. ''TmfRangeSynchSignal'' is sent when a page is changed in the Sequence Diagram View. The start timestamp of the time range sent is the timestamp of the first message. The end timestamp sent is the timestamp of the first message plus the current time range window. The current time range window is the time window that was indicated in the last received ''TmfRangeSynchSignal''.

=== Supported Traces ===

The reference implementation is able to analyze traces from a single component that traces the interaction with other components. For example, a server node could have trace information about its interaction with client nodes. The server node could be traced and then analyzed using TMF and the Sequence Diagram Framework of TMF could used to visualize the interactions with the client nodes.<br>

Note that combined traces of multiple components that contain the trace information about the same interactions are not supported in the reference implementation!

=== Trace Format ===

The reference implementation in class ''TmfUml2SDSyncLoader'' in package ''org.eclipse.tracecompass.tmf.ui.views.uml2sd.impl'' analyzes events from type ''ITmfEvent'' and creates events type ''ITmfSyncSequenceDiagramEvent'' if the ''ITmfEvent'' contains all relevant information information. The parsing algorithm looks like as follows:

<pre>
    /**
     * @param tmfEvent Event to parse for sequence diagram event details
     * @return sequence diagram event if details are available else null
     */
    protected ITmfSyncSequenceDiagramEvent getSequenceDiagramEvent(ITmfEvent tmfEvent){
        //type = .*RECEIVE.* or .*SEND.*
        //content = sender:<sender name>:receiver:<receiver name>,signal:<signal name>
        String eventType = tmfEvent.getType().toString();
        if (eventType.contains(Messages.TmfUml2SDSyncLoader_EventTypeSend) || eventType.contains(Messages.TmfUml2SDSyncLoader_EventTypeReceive)) {
            Object sender = tmfEvent.getContent().getField(Messages.TmfUml2SDSyncLoader_FieldSender);
            Object receiver = tmfEvent.getContent().getField(Messages.TmfUml2SDSyncLoader_FieldReceiver);
            Object name = tmfEvent.getContent().getField(Messages.TmfUml2SDSyncLoader_FieldSignal);
            if ((sender instanceof ITmfEventField) && (receiver instanceof ITmfEventField) && (name instanceof ITmfEventField)) {
                ITmfSyncSequenceDiagramEvent sdEvent = new TmfSyncSequenceDiagramEvent(tmfEvent,
                                ((ITmfEventField) sender).getValue().toString(),
                                ((ITmfEventField) receiver).getValue().toString(),
                                ((ITmfEventField) name).getValue().toString());

                return sdEvent;
            }
        }
        return null;
    }
</pre>

The analysis looks for event type Strings containing ''SEND'' and ''RECEIVE''. If event type matches these key words, the analyzer will look for strings ''sender'', ''receiver'' and ''signal'' in the event fields of type ''ITmfEventField''. If all the data is found a sequence diagram event can be created using this information. Note that Sync Messages are assumed, which means start and end time are the same.

=== How to use the Reference Implementation ===

An example CTF (Common Trace Format) trace is provided that contains trace events with sequence diagram information. To download the reference trace, use the following link: [https://wiki.eclipse.org/images/3/35/ReferenceTrace.zip Reference Trace].

Run an Eclipse application with Trace Compass 0.1.0 or later installed. To open the Reference Sequence Diagram View, select '''Windows -> Show View -> Other... -> Tracing -> Sequence Diagram''' <br>
[[Image:images/ShowTmfSDView.png]]<br>

A blank Sequence Diagram View will open.

Then import the reference trace to the '''Project Explorer''' using the '''Import Trace Package...''' menu option.<br>
[[Image:images/ImportTracePackage.png]]

Next, open the trace by double-clicking on the trace element in the '''Project Explorer'''. The trace will be opened and the Sequence Diagram view will be filled.
[[Image:images/ReferenceSeqDiagram.png]]<br>

Now the reference implementation can be explored. To demonstrate the view features try the following things:
*Select a message in the Sequence diagram. As result the corresponding event will be selected in the Events View.
*Select an event in the Events View. As result the corresponding message in the Sequence Diagram View will be selected. If necessary, the page will be changed.
*In the Events View, press key ''End''. As result, the Sequence Diagram view will jump to the last page.  
*In the Events View, press key ''Home''. As result, the Sequence Diagram view will jump to the first page.
*In the Sequence Diagram View select the find button. Enter the expression '''REGISTER.*''', select '''Search for Interaction''' and press '''Find'''. As result the corresponding message will be selected in the Sequence Diagram and the corresponding event in the Events View will be selected. Select again '''Find''' the next occurrence of will be selected. Since the second occurrence is on a different page than the first, the corresponding page will be loaded.
* In the Sequence Diagram View, select menu item '''Hide Patterns...'''. Add the filter '''BALL.*''' for '''Interaction''' only and select '''OK'''. As result all messages with name ''BALL_REQUEST'' and ''BALL_REPLY'' will be hidden. To remove the filter, select menu item '''Hide Patterns...''', deselect the corresponding filter and press '''OK'''. All the messages will be shown again.<br> 
 
=== Extending the Reference Loader ===

In some case it might be necessary to change the implementation of the analysis of each ''TmfEvent'' for the generation of ''Sequence Diagram Events''. For that just extend the class ''TmfUml2SDSyncLoader'' and overwrite the method ''protected ITmfSyncSequenceDiagramEvent getSequenceDiagramEvent(ITmfEvent tmfEvent)'' with your own implementation.

= CTF Parser =

== CTF Format ==
CTF is a format used to store traces. It is self defining, binary and made to be easy to write to.
Before going further, the full specification of the CTF file format can be found at http://www.efficios.com/ .

For the purpose of the reader some basic description will be given. A CTF trace typically is made of several files all in the same folder.

These files can be split into two types:
* Metadata
* Event streams

=== Metadata ===
The metadata is either raw text or packetized text. It is TSDL encoded. it contains a description of the type of data in the event streams. It can grow over time if new events are added to a trace but it will never overwrite what is already there.

=== Event Streams ===
The event streams are a file per stream per cpu. These streams are binary and packet based. The streams store events and event information (ie lost events) The event data is stored in headers and field payloads.

So if you have two streams (channels) "channel1" and "channel2" and 4 cores, you will have the following files in your trace directory: "channel1_0" , "channel1_1" , "channel1_2" , "channel1_3" , "channel2_0" , "channel2_1" , "channel2_2" & "channel2_3"

== Reading a trace ==
In order to read a CTF trace, two steps must be done.
* The metadata must be read to know how to read the events.
* the events must be read.

The metadata is a written in a subset of the C language called TSDL. To read it, first it is depacketized (if it is not in plain text) then the raw text is parsed by an antlr grammar. The parsing is done in two phases. There is a lexer (CTFLexer.g) which separated the metatdata text into tokens. The tokens are then pattern matched using the parser (CTFParser.g) to form an AST. This AST is walked through using "IOStructGen.java" to populate streams and traces in trace parent object.

When the metadata is loaded and read, the trace object will be populated with 3 items:
* the event definitions available per stream: a definition is a description of the datatype.
* the event declarations available per stream: this will save declaration creation on a per event basis. They will all be created in advance, just not populated.
* the beginning of a packet index.

Now all the trace readers for the event streams have everything they need to read a trace. They will each point to one file, and read the file from packet to packet. Every time the trace reader changes packet, the index is updated with the new packet's information. The readers are in a priority queue and sorted by timestamp. This ensures that the events are read in a sequential order. They are also sorted by file name so that in the eventuality that two events occur at the same time, they stay in the same order.

== Seeking in a trace ==
The reason for maintaining an index is to speed up seeks. In the case that a user wishes to seek to a certain timestamp, they just have to find the index entry that contains the timestamp, and go there to iterate in that packet until the proper event is found. this will reduce the searches time by an order of 8000 for a 256k packet size (kernel default).

== Interfacing to TMF == 
The trace can be read easily now but the data is still awkward to extract.

=== CtfLocation ===
A location in a given trace, it is currently the timestamp of a trace and the index of the event. The index shows for a given timestamp if it is the first second or nth element.

=== CtfTmfTrace ===
The CtfTmfTrace is a wrapper for the standard CTF trace that allows it to perform the following actions: 
* '''initTrace()''' create a trace
* '''validateTrace()''' is the trace a CTF trace?
* '''getLocationRatio()''' how far in the trace is my location?
* '''seekEvent()''' sets the cursor to a certain point in a trace.
* '''readNextEvent()''' reads the next event and then advances the cursor
* '''getTraceProperties()''' gets the 'env' structures of the metadata

=== CtfIterator ===
The CtfIterator is a wrapper to the CTF file reader. It behaves like an iterator on a trace. However, it contains a file pointer and thus cannot be duplicated too often or the system will run out of file handles. To alleviate the situation, a pool of iterators is created at the very beginning and stored in the CtfTmfTrace. They can be retried by calling the GetIterator() method.

=== CtfIteratorManager ===
Since each CtfIterator will have a file reader, the OS will run out of handles if too many iterators are spawned. The solution is to use the iterator manager. This will allow the user to get an iterator. If there is a context at the requested position, the manager will return that one, if not, a context will be selected at random and set to the correct location. Using random replacement minimizes contention as it will settle quickly at a new balance point.

=== CtfTmfContext ===
The CtfTmfContext implements the ITmfContext type. It is the CTF equivalent of TmfContext. It has a CtfLocation and points to an iterator in the CtfTmfTrace iterator pool as well as the parent trace. it is made to be cloned easily and not affect system resources much. Contexts behave much like C file pointers (FILE*) but they can be copied until one runs out of RAM.

=== CtfTmfTimestamp ===
The CtfTmfTimestamp take a CTF time (normally a long int) and outputs the time formats it as a TmfTimestamp, allowing it to be compared to other timestamps. The time is stored with the UTC offset already applied. It also features a simple toString() function that allows it to output the time in more Human readable ways: "yyyy/mm/dd/hh:mm:ss.nnnnnnnnn ns" for example. An additional feature is the getDelta() function that allows two timestamps to be substracted, showing the time difference between A and B.
 
=== CtfTmfEvent ===
The CtfTmfEvent is an ITmfEvent that is used to wrap event declarations and event definitions from the CTF side into easier to read and parse chunks of information. It is a final class with final fields made to be newed very often without incurring performance costs. Most of the information is already available. It should be noted that one type of event can appear called "lost event" these are synthetic events that do not exist in the trace. They will not appear in other trace readers such as babeltrace.

=== Other ===
There are other helper files that format given events for views, they are simpler and the architecture does not depend on them.

=== Limitations ===
For the moment live CTF trace reading is not supported.

= Event matching and trace synchronization =

Event matching consists in taking an event from a trace and linking it to another event in a possibly different trace. The example that comes to mind is matching network packets sent from one traced machine to another traced machine. These matches can be used to synchronize traces.

Trace synchronization consists in taking traces, taken on different machines, with a different time reference, and finding the formula to transform the timestamps of some of the traces, so that they all have the same time reference.

== Event matching interfaces ==

Here's a description of the major parts involved in event matching.  These classes are all in the ''org.eclipse.tracecompass.tmf.core.event.matching'' package:

* '''ITmfEventMatching''': Controls the event matching process
* '''ITmfMatchEventDefinition''': Describes how events are matched
* '''IMatchProcessingUnit''': Processes the matched events

== Implementation details and how to extend it ==

=== ITmfEventMatching interface and derived classes ===

This interface controls the event matching itself. Their only public method is ''matchEvents''. The implementing classes needs to manage how to setup the traces, and any initialization or finalization procedures.

The is one concrete implementation of this interface: '''TmfEventMatching'''. It makes a request on the traces and match events where a ''cause'' event can be uniquely matched with a ''effect'' event. It creates a '''TmfEventDependency''' between the source and destination events. The dependency is added to the processing unit.

To match events requiring other mechanisms (for instance, a series of events can be matched with another series of events), one would need to add another class either implementing '''ITmfEventMatching'''. It would most probably also require a new '''ITmfMatchEventDefinition''' implementation.

=== ITmfMatchEventDefinition interface and its derived classes ===

These are the classes that describe how to actually match specific events together.

The '''canMatchTrace''' method will tell if a definition is compatible with a given trace.

The '''getEventKey''' method will return a key for an event that uniquely identifies this event and will match the key from another event.

The '''getDirection''' method indicates whether this event is a ''cause'' or ''effect'' event to be matched with one from the opposite direction.

As examples, two concrete network match definitions have been implemented in the ''org.eclipse.tracecompass.internal.lttng2.kernel.core.event.matching'' package for two compatible methods of matching TCP packets (See the Trace Compass User Guide on ''trace synchronization'' for information on those matching methods). Each one tells which events need to be present in the metadata of a CTF trace for this matching method to be applicable. It also returns the field values from each event that will uniquely match 2 events together.

Each '''IMatchEventDefinition''' needs to be registered to the '''TmfEventMatching''' class using the following code for example

<pre>
TmfEventMatching.registerMatchObject(new TcpEventMatching());
</pre>

=== IMatchProcessingUnit interface and derived classes ===

While matching events is an exercise in itself, it's what to do with the match that really makes this functionality interesting. This is the job of the '''IMatchProcessingUnit''' interface.

'''TmfEventMatches''' provides a default implementation that only stores the matches to count them. When a new match is obtained, the ''addMatch'' is called with the match and the processing unit can do whatever needs to be done with it.

A match processing unit can be an analysis in itself. For example, trace synchronization is done through such a processing unit. One just needs to set the processing unit in the TmfEventMatching constructor.

== Code examples ==

=== Using network packets matching in an analysis ===

This example shows how one can create a processing unit inline to create a link between two events. In this example, the code already uses an event request, so there is no need here to call the ''matchEvents'' method, that will only create another request.

<pre>
class MyAnalysis extends TmfAbstractAnalysisModule {

    private TmfNetworkEventMatching tcpMatching;

    ...

    protected void executeAnalysis() {

        IMatchProcessingUnit matchProcessing = new IMatchProcessingUnit() {
            @Override
            public void matchingEnded() {
            }

            @Override
            public void init(ITmfTrace[] fTraces) {
            }

            @Override
            public int countMatches() {
                return 0;
            }

            @Override
            public void addMatch(TmfEventDependency match) {
                log.debug("we got a tcp match! " + match.getSourceEvent().getContent() + " " + match.getDestinationEvent().getContent());
                TmfEvent source = match.getSourceEvent();
                TmfEvent destination = match.getDestinationEvent();
                /* Create a link between the two events */
            }
        };

        ITmfTrace[] traces = { getTrace() };
        tcpMatching = new TmfEventMatching(traces, matchProcessing);
        tcpMatching.initMatching();

        MyEventRequest request = new MyEventRequest(this, i);
        getTrace().sendRequest(request);
    }

    public void analyzeEvent(TmfEvent event) {
        ...
        tcpMatching.matchEvent(event, 0);
        ...
    }

    ...

}

class MyEventRequest extends TmfEventRequest {

    private final MyAnalysis analysis;

    MyEventRequest(MyAnalysis analysis, int traceno) {
        super(CtfTmfEvent.class,
            TmfTimeRange.ETERNITY,
            0,
            TmfDataRequest.ALL_DATA,
            ITmfDataRequest.ExecutionType.FOREGROUND);
        this.analysis = analysis;
    }

    @Override
    public void handleData(final ITmfEvent event) {
        super.handleData(event);
        if (event != null) {
            analysis.analyzeEvent(event);
        }
    }
}
</pre>

=== Match events from UST traces ===

Suppose a client-server application is instrumented using LTTng-UST. Traces are collected on the server and some clients on different machines. The traces can be synchronized using network event matching.

The following metadata describes the events:

<pre>
    event {
        name = "myapp:send";
        id = 0;
        stream_id = 0;
        loglevel = 13;
        fields := struct {
            integer { size = 32; align = 8; signed = 1; encoding = none; base = 10; } _sendto;
            integer { size = 64; align = 8; signed = 1; encoding = none; base = 10; } _messageid;
            integer { size = 64; align = 8; signed = 1; encoding = none; base = 10; } _data;
        };
    };

    event {
        name = "myapp:receive";
        id = 1;
        stream_id = 0;
        loglevel = 13;
        fields := struct {
            integer { size = 32; align = 8; signed = 1; encoding = none; base = 10; } _from;
            integer { size = 64; align = 8; signed = 1; encoding = none; base = 10; } _messageid;
            integer { size = 64; align = 8; signed = 1; encoding = none; base = 10; } _data;
        };
    };
</pre>

One would need to write an event match definition for those 2 events as follows:

<pre>
public class MyAppUstEventMatching implements ITmfMatchEventDefinition {

    public class MyEventMatchingKey implements IEventMatchingKey {

        private static final HashFunction HF = checkNotNull(Hashing.goodFastHash(32));
        private final int fTo;
        private final long fId;

        public MyEventMatchingKey(int to, long id) {
            fTo = to;
            fId = id;
        }

        @Override
        public int hashCode() {
            return HF.newHasher()
                .putInt(fTo)
                .putLong(fId).hash().asInt();
        }

        @Override
        public boolean equals(@Nullable Object o) {
            if (o instanceof MyEventMatchingKey) {
                MyEventMatchingKey key = (MyEventMatchingKey) o;
                return (key.fTo == fTo &&
                    key.fId == fId);
            }
            return false;
        }
    }


    @Override
    public Direction getDirection(ITmfEvent event) {
        String evname = event.getType().getName();
        if (evname.equals("myapp:receive")) {
            return Direction.EFFECT;
        } else if (evname.equals("myapp:send")) {
            return Direction.CAUSE;
        }
        return null;
    }

    @Override
    public IEventMatchingKey getEventKey(ITmfEvent event) {
        IEventMatchingKey key;

        if (evname.equals("myapp:receive")) {
            key = new MyEventMatchingKey(event.getContent().getField("from").getValue(),
                event.getContent().getField("messageid").getValue());
        } else {
            key = new MyEventMatchingKey(event.getContent().getField("sendto").getValue(),
                event.getContent().getField("messageid").getValue());
        }

        return key;
    }

    @Override
    public boolean canMatchTrace(ITmfTrace trace) {
        Set<String> events = ImmutableSet.of("myapp:receive", "myapp:send");
        if (!(trace instanceof ITmfTraceWithPreDefinedEvents)) {
            return false;
        }
        ITmfTraceWithPreDefinedEvents ktrace = (ITmfTraceWithPreDefinedEvents) trace;

        Set<String> traceEvents = TmfEventTypeCollectionHelper.getEventName(ktrace.getContainedEventTypes());
        traceEvents.retainAll(events);
        return !traceEvents.isEmpty();
    }

}
</pre>

The following code will have to be run before the trace synchronization takes place, for example in the Activator of the plugin:

<pre>
TmfEventMatching.registerMatchObject(new MyAppUstEventMatching());
</pre>

Now, only adding the traces in an experiment and clicking the '''Synchronize traces''' menu item will synchronize the traces using the new definition for event matching.

== Trace synchronization ==

Trace synchronization classes and interfaces are located in the ''org.eclipse.tracecompass.tmf.core.synchronization'' package.

=== Synchronization algorithm ===

Synchronization algorithms are used to synchronize traces from events matched between traces. After synchronization, traces taken on different machines with different time references see their timestamps modified such that they all use the same time reference (typically, the time of at least one of the traces). With traces from different machines, it is impossible to have perfect synchronization, so the result is a best approximation that takes network latency into account.

The abstract class '''SynchronizationAlgorithm''' is a processing unit for matches. New synchronization algorithms must extend this one, it already contains the functions to get the timestamp transforms for different traces.

The ''fully incremental convex hull'' synchronization algorithm is the default synchronization algorithm.

While the synchronization system provisions for more synchronization algorithms, there is not yet a way to select one, the experiment's trace synchronization uses the default algorithm. To test a new synchronization algorithm, the synchronization should be called directly like this:

<pre>
SynchronizationAlgorithm syncAlgo = new MyNewSynchronizationAlgorithm();
syncAlgo = SynchronizationManager.synchronizeTraces(syncFile, traces, syncAlgo, true);
</pre>

=== Timestamp transforms ===

Timestamp transforms are the formulae used to transform the timestamps from a trace into the reference time. The '''ITmfTimestampTransform''' is the interface to implement to add a new transform.

The following classes implement this interface:

* '''TmfTimestampTransform''': default transform. It cannot be instantiated, it has a single static object ''TmfTimestampTransform.IDENTITY'', which returns the original timestamp.
* '''TmfConstantTransform''': simply applies an offset to the timestamp, so the formula would be: ''f(t) = t + c'' where ''c'' is the offset to apply.
* '''TmfTimestampTransformLinear''': transforms the timestamp using a linear formula: ''f(t) = at + b'', where ''a'' and ''b'' are computed by the synchronization algorithm.

These classes are not accessible directly, to create any timestamp transform, one needs to use one of the methods from the '''TimestampTransformFactory''' utility class.

One could extend the interface for other timestamp transforms, for instance to have a transform where the formula would change over the course of the trace.

== Todo ==

Here's a list of features not yet implemented that would enhance trace synchronization and event matching:

* Ability to select a synchronization algorithm
* Implement the minimum spanning tree algorithm by Masoume Jabbarifar (article on the subject not published yet) to automatically select the best reference trace
* Instead of having the timestamp transforms per trace, have the timestamp transform as part of an experiment context, so that the trace's specific analysis, like the state system, are in the original trace, but are transformed only when needed for an experiment analysis.
* Add more views to display the synchronization information (only textual statistics are available for now)

= Analysis Framework =

Analysis modules are useful to tell the user exactly what can be done with a trace. The analysis framework provides an easy way to access and execute the modules and open the various outputs available.

Analyses can have parameters they can use in their code. They also have outputs registered to them to display the results from their execution.

== Creating a new module ==

All analysis modules must implement the '''IAnalysisModule''' interface from the o.e.l.tmf.core project. An abstract class, '''TmfAbstractAnalysisModule''', provides a good base implementation. It is strongly suggested to use it as a superclass of any new analysis.

=== Example ===

This example shows how to add a simple analysis module for an LTTng kernel trace with two parameters. It also specifies two mandatory events by overriding '''getAnalysisRequirements'''. The analysis requirements are further explained in the section [[#Providing requirements to analyses]].

<pre>
public class MyLttngKernelAnalysis extends TmfAbstractAnalysisModule {

    public static final String PARAM1 = "myparam";
    public static final String PARAM2 = "myotherparam";

    @Override
    public Iterable<TmfAnalysisRequirement> getAnalysisRequirements() {

        // initialize the requirement: events
        Set<@NonNull String> requiredEvents = ImmutableSet.of("sched_switch", "sched_wakeup");
        TmfAbstractAnalysisRequirement eventsReq = new TmfAnalysisEventRequirement(requiredEvents, PriorityLevel.MANDATORY);

        return ImmutableList.of(eventsReq);
    }

    @Override
    protected void canceling() {
	     /* The job I am running in is being cancelled, let's clean up */
    }

    @Override
    protected boolean executeAnalysis(final IProgressMonitor monitor) {
        /*
         * I am running in an Eclipse job, and I already know I can execute
         * on a given trace.
         *
         * In the end, I will return true if I was successfully completed or
         * false if I was either interrupted or something wrong occurred.
         */
        Object param1 = getParameter(PARAM1);
        int param2 = (Integer) getParameter(PARAM2);
    }

    @Override
    public Object getParameter(String name) {
        Object value = super.getParameter(name);
        /* Make sure the value of param2 is of the right type. For sake of
           simplicity, the full parameter format validation is not presented
           here */
        if ((value != null) && name.equals(PARAM2) && (value instanceof String)) {
            return Integer.parseInt((String) value);
        }
        return value;
    }

}
</pre>

=== Available base analysis classes and interfaces ===

The following are available as base classes for analysis modules. They also extend the abstract '''TmfAbstractAnalysisModule'''

* '''TmfStateSystemAnalysisModule''': A base analysis module that builds one state system. A module extending this class only needs to provide a state provider and the type of state system backend to use. All state systems should now use this base class as it also contains all the methods to actually create the state sytem with a given backend. An example of this kind of analysis module can be found in [[#Analysis module definition]].

The following interfaces can optionally be implemented by analysis modules if they use their functionalities. For instance, some utility views, like the State System Explorer, may have access to the module's data through these interfaces.

* '''ITmfAnalysisModuleWithStateSystems''': Modules implementing this have one or more state systems included in them. For example, a module may "hide" 2 state system modules for its internal workings. By implementing this interface, it tells that it has state systems and can return them if required.

=== How it works ===

Analyses are managed through the '''TmfAnalysisManager'''. The analysis manager is a singleton in the application and keeps track of all available analysis modules, with the help of '''IAnalysisModuleHelper'''. It can be queried to get the available analysis modules, either all of them or only those for a given tracetype. The helpers contain the non-trace specific information on an analysis module: its id, its name, the tracetypes it applies to, etc.

When a trace is opened, the helpers for the applicable analysis create new instances of the analysis modules. The analyses are then kept in a field of the trace and can be executed automatically or on demand.

The analysis is executed by calling the '''IAnalysisModule#schedule()''' method. This method makes sure the analysis is executed only once and, if it is already running, it won't start again. The analysis itself is run inside an Eclipse job that can be cancelled by the user or the application. The developer must consider the progress monitor that comes as a parameter of the '''executeAnalysis()''' method, to handle the proper cancellation of the processing. The '''IAnalysisModule#waitForCompletion()''' method will block the calling thread until the analysis is completed. The method will return whether the analysis was successfully completed or if it was cancelled.

A running analysis can be cancelled by calling the '''IAnalysisModule#cancel()''' method. This will set the analysis as done, so it cannot start again unless it is explicitly reset. This is done by calling the protected method '''resetAnalysis'''.

== Telling TMF about the analysis module ==

Now that the analysis module class exists, it is time to hook it to the rest of TMF so that it appears under the traces in the project explorer. The way to do so is to add an extension of type ''org.eclipse.linuxtools.tmf.core.analysis'' to a plugin, either through the ''Extensions'' tab of the Plug-in Manifest Editor or by editing directly the plugin.xml file.

The following code shows what the resulting plugin.xml file should look like.

<pre>
<extension
         point="org.eclipse.linuxtools.tmf.core.analysis">
      <module
         id="my.lttng.kernel.analysis.id"
         name="My LTTng Kernel Analysis"
         analysis_module="my.plugin.package.MyLttngKernelAnalysis"
         applies_experiment="false"
         automatic="true">
         <parameter
               name="myparam">
         </parameter>
         <parameter
               default_value="3"
               name="myotherparam" />
         <tracetype
               class="org.eclipse.tracecompass.lttng2.kernel.core.trace.LttngKernelTrace">
         </tracetype>
      </module>
</extension>
</pre>

This defines an analysis module where the ''analysis_module'' attribute corresponds to the module class and must implement IAnalysisModule. This module has 2 parameters: ''myparam'' and ''myotherparam'' which has default value of 3. The ''tracetype'' element tells which tracetypes this analysis applies to. There can be many tracetypes. Also, the ''automatic'' attribute of the module indicates whether this analysis should be run when the trace is opened, or wait for the user's explicit request.

Since experiments are traces too, it is possible to develop an analysis to work on experiment by setting the ''tracetype'' to the experiment's ID (the ID for the default experiment is ''org.eclipse.tracecompass.tmf.core.trace.experiment.TmfExperiment''). Setting the ''applies_experiment'' attribute to '''true''' creates a new instance of the analysis for an experiment that contains any trace of the correct type. This analysis runs on the whole experiment and will process all events. It is useful for analysis that are enhanced with data from multiple traces.

Note that with these extension points, it is possible to use the same module class for more than one analysis (with different ids and names). That is a desirable behavior. For instance, a third party plugin may add a new tracetype different from the one the module is meant for, but on which the analysis can run. Also, different analyses could provide different results with the same module class but with different default values of parameters.

== Attaching outputs and views to the analysis module ==

Analyses will typically produce outputs the user can examine. Outputs can be a text dump, a .dot file, an XML file, a view, etc. All output types must implement the '''IAnalysisOutput''' interface.

An output can be registered to an analysis module at any moment by calling the '''IAnalysisModule#registerOutput()''' method. Analyses themselves may know what outputs are available and may register them in the analysis constructor or after analysis completion.

The various concrete output types are:

* '''TmfAnalysisViewOutput''': It takes a view ID as parameter and, when selected, opens the view.

=== Using the extension point to add outputs ===

Analysis outputs can also be hooked to an analysis using the same extension point ''org.eclipse.linuxtools.tmf.core.analysis'' in the plugin.xml file. Outputs can be matched either to a specific analysis identified by an ID, or to all analysis modules extending or implementing a given class or interface.

The following code shows how to add a view output to the analysis defined above directly in the plugin.xml file. This extension does not have to be in the same plugin as the extension defining the analysis. Typically, an analysis module can be defined in a core plugin, along with some outputs that do not require UI elements. Other outputs, like views, who need UI elements, will be defined in a ui plugin.

<pre>
<extension
         point="org.eclipse.linuxtools.tmf.core.analysis">
      <output
            class="org.eclipse.tracecompass.tmf.ui.analysis.TmfAnalysisViewOutput"
            id="my.plugin.package.ui.views.myView">
         <analysisId
               id="my.lttng.kernel.analysis.id">
         </analysisId>
      </output>
      <output
            class="org.eclipse.tracecompass.tmf.ui.analysis.TmfAnalysisViewOutput"
            id="my.plugin.package.ui.views.myMoreGenericView">
         <analysisModuleClass
               class="my.plugin.package.core.MyAnalysisModuleClass">
         </analysisModuleClass>
      </output>
</extension>
</pre>

== Providing help for the module ==

For now, the only way to provide a meaningful help message to the user is by overriding the '''IAnalysisModule#getHelpText()''' method and return a string that will be displayed in a message box.

What still needs to be implemented is for a way to add a full user/developer documentation with mediawiki text file for each module and automatically add it to Eclipse Help. Clicking on the Help menu item of an analysis module would open the corresponding page in the help.

== Using analysis parameter providers ==

An analysis may have parameters that can be used during its execution. Default values can be set when describing the analysis module in the plugin.xml file, or they can use the '''IAnalysisParameterProvider''' interface to provide values for parameters. '''TmfAbstractAnalysisParamProvider''' provides an abstract implementation of this interface, that automatically notifies the module of a parameter change.

=== Example parameter provider ===

The following example shows how to have a parameter provider listen to a selection in the LTTng kernel Control Flow view and send the thread id to the analysis.

<pre>
public class MyLttngKernelParameterProvider extends TmfAbstractAnalysisParamProvider {

    private ControlFlowEntry fCurrentEntry = null;

    private static final String NAME = "My Lttng kernel parameter provider"; //$NON-NLS-1$

    private ISelectionListener selListener = new ISelectionListener() {
        @Override
        public void selectionChanged(IWorkbenchPart part, ISelection selection) {
            if (selection instanceof IStructuredSelection) {
                Object element = ((IStructuredSelection) selection).getFirstElement();
                if (element instanceof ControlFlowEntry) {
                    ControlFlowEntry entry = (ControlFlowEntry) element;
                    setCurrentThreadEntry(entry);
                }
            }
        }
    };

    /*
     * Constructor
     */
    public MyLttngKernelParameterProvider() {
        super();
        registerListener();
    }

    @Override
    public String getName() {
        return NAME;
    }

    @Override
    public Object getParameter(String name) {
        if (fCurrentEntry == null) {
            return null;
        }
        if (name.equals(MyLttngKernelAnalysis.PARAM1)) {
            return fCurrentEntry.getThreadId();
        }
        return null;
    }

    @Override
    public boolean appliesToTrace(ITmfTrace trace) {
        return (trace instanceof LttngKernelTrace);
    }

    private void setCurrentThreadEntry(ControlFlowEntry entry) {
        if (!entry.equals(fCurrentEntry)) {
            fCurrentEntry = entry;
            this.notifyParameterChanged(MyLttngKernelAnalysis.PARAM1);
        }
    }

    private void registerListener() {
        final IWorkbench wb = PlatformUI.getWorkbench();

        final IWorkbenchPage activePage = wb.getActiveWorkbenchWindow().getActivePage();

        /* Add the listener to the control flow view */
        view = activePage.findView(ControlFlowView.ID);
        if (view != null) {
            view.getSite().getWorkbenchWindow().getSelectionService().addPostSelectionListener(selListener);
            view.getSite().getWorkbenchWindow().getPartService().addPartListener(partListener);
        }
    }

}
</pre>

=== Register the parameter provider to the analysis ===

To have the parameter provider class register to analysis modules, it must first register through the analysis manager. It can be done in a plugin's activator as follows:

<pre>
@Override
public void start(BundleContext context) throws Exception {
    /* ... */
    TmfAnalysisManager.registerParameterProvider("my.lttng.kernel.analysis.id", MyLttngKernelParameterProvider.class)
}
</pre>

where '''MyLttngKernelParameterProvider''' will be registered to analysis ''"my.lttng.kernel.analysis.id"''. When the analysis module is created, the new module will register automatically to the singleton parameter provider instance. Only one module is registered to a parameter provider at a given time, the one corresponding to the currently selected trace.

== Providing requirements to analyses ==

=== Analysis requirement provider API ===

A requirement defines the needs of an analysis. For example, an analysis could need an event named ''"sched_switch"'' in order to be properly executed. The requirements are represented by extending the class '''TmfAbstractAnalysisRequirement'''. Since '''IAnalysisModule''' extends the '''IAnalysisRequirementProvider''' interface, all analysis modules must provide their requirements. If the analysis module extends '''TmfAbstractAnalysisModule''', it has the choice between overriding the requirements getter ('''IAnalysisRequirementProvider#getAnalysisRequirements()''') or not, since the abstract class returns an empty collection by default (no requirements).

=== Requirement values ===

Each concrete analysis requirement class will define how a requirement is verified on a given trace. 
When creating a requirement, the developer will specify a set of values for that class.
With an 'event' type requirement, a trace generator like the LTTng Control could automatically
enable the required events. 
Another point we have to take into consideration is the priority level when creating a requirement object.
The enum '''TmfAbstractAnalysisRequirement#PriorityLevel''' gives the choice
between '''PriorityLevel#OPTIONAL''', '''PriorityLevel#ALL_OR_NOTHING''',
'''PriorityLevel#AT_LEAST_ONE''' or '''PriorityLevel#MANDATORY'''. That way, we
can tell if an analysis can run without a value or not.


To create a requirement one has the choice to extend the abstract class
'''TmfAbstractAnalysisRequirement''' or use the existing implementations:
'''TmfAnalysisEventRequirement''' (will verify the presence of events identified by name),
'''TmfAnalysisEventFieldRequirement''' (will verify the presence of fields for some or all events) or
'''TmfCompositeAnalysisRequirement''' (join requirements together with one of the priority levels).

Moreover, information can be added to requirements. That way, the developer can explicitly give help details at the requirement level instead of at the analysis level (which would just be a general help text). To add information to a requirement, the method '''TmfAnalysisRequirement#addInformation()''' must be called. Adding information is not mandatory.

=== Example of providing requirements ===

In this example, we will implement a method that initializes a requirement object
and return it in the '''IAnalysisRequirementProvider#getAnalysisRequirements()'''
getter. The example method will return a set with three requirements.
The first one will indicate a mandatory event needed by a specific analysis,
the second one will tell an optional event name and the third will indicate
mandatory event fields for the given event type.

Note that in LTTng event contexts are considered as event fields. Using the
'''TmfAnalysisEventFieldRequirement''' it's possible to define requirements
on event contexts (see 3rd requirement in example below).

<pre>
    @Override
    public @NonNull Iterable<@NonNull TmfAbstractAnalysisRequirement> getAnalysisRequirements() {

        /* Requirement on event name */
        Set<@NonNull String> requiredEvents = ImmutableSet.of("sched_wakeup");
        TmfAbstractAnalysisRequirement eventsReq1 = new TmfAnalysisEventRequirement(requiredEvents, PriorityLevel.MANDATORY);

        requiredEvents = ImmutableSet.of("sched_switch");
        TmfAbstractAnalysisRequirement eventsReq2 = new TmfAnalysisEventRequirement(requiredEvents, PriorityLevel.OPTIONAL);

        /* An information about the events */
        eventsReq2.addInformation("The event sched_wakeup is optional because it's not properly handled by this analysis yet.");

        /* Requirement on event fields */
        Set<@NonNull String> requiredEventFields = ImmutableSet.of("context._procname", "context._ip");
        TmfAbstractAnalysisRequirement eventFieldRequirement = new TmfAnalysisEventFieldRequirement(
                 "event name",
                 requiredEventFields,
                 PriorityLevel.MANDATORY);

         Set<TmfAbstractAnalysisRequirement> requirements = ImmutableSet.of(eventsReq1, eventsReq2, eventFieldRequirement);
         return requirements;
    }
</pre>


== TODO ==

Here's a list of features not yet implemented that would improve the analysis module user experience:

* Implement help using the Eclipse Help facility (without forgetting an eventual command line request)
* The abstract class '''TmfAbstractAnalysisModule''' executes an analysis as a job, but nothing compels a developer to do so for an analysis implementing the '''IAnalysisModule''' interface. We should force the execution of the analysis as a job, either from the trace itself or using the TmfAnalysisManager or by some other mean.
* Views and outputs are often registered by the analysis themselves (forcing them often to be in the .ui packages because of the views), because there is no other easy way to do so. We should extend the analysis extension point so that .ui plugins or other third-party plugins can add outputs to a given analysis that resides in the core.
* Improve the user experience with the analysis:
** Allow the user to select which analyses should be available, per trace or per project.
** Allow the user to view all available analyses even though he has no imported traces.
** Allow the user to generate traces for a given analysis, or generate a template to generate the trace that can be sent as parameter to the tracer.
** Give the user a visual status of the analysis: not executed, in progress, completed, error.
** Give a small screenshot of the output as icon for it.
** Allow to specify parameter values from the GUI.
* Add the possibility for an analysis requirement to be composed of another requirement.
* Generate a trace session from analysis requirements.

= TMF Remote API =
The TMF remote API is based on the remote services implementation of the Eclipse PTP project. It comes with a built-in SSH implementation based JSch as well as with support for a local connection. The purpose of this API is to provide a programming interface to the PTP remote services implementation for connection handling, command-line execution and file transfer handling. It provides utility functions to simplify repetitive tasks.

The TMF Remote API can be used for remote trace control, fetching of traces from a remote host into the Eclipse Tracing project or uploading files to the remote host. For example, the LTTng tracer control feature uses the TMF remote API to control an LTTng host remotely and to download corresponding traces.

In the following chapters the relevant classes and features of the TMF remote API is described.

== Prerequisites ==

To use the TMF remote API one has to add the relevant plug-in dependencies to a plug-in project. To create a plug-in project see chapter [[#Creating an Eclipse UI Plug-in]].

To add plug-in dependencies double-click on the MANIFEST.MF file. Change to the Dependencies tab and select '''Add...''' of the ''Required Plug-ins'' section. A new dialog box will open. Next find plug-in ''org.eclipse.tracecompass.tmf.remote.core'' and press '''OK'''. Follow the same steps, add ''org.eclipse.remote.core''. If UI elements are needed in the plug-in also add ''org.eclipse.tracecompass.tmf.remote.ui'' and ''org.eclipse.remote.ui''.

== TmfRemoteConnectionFactory ==
This class is a utility class for creating ''IRemoteConnection'' instances of PTP programatically. It also provides access methods to the OSGI remote services of PTP.

=== Accessing the remote services manager (OSGI service) ===
The main entry point into the PTP remote services system is the ''IRemoteServicesManager'' OSGI service. It provides a list of connection types and the global list of all connections.

To access an OSGI service, use the method '''getService()''' of the '''TmfRemoteConnectionFactory''' class:

<pre>
IRemoteServicesManager manager = TmfRemoteConnectionFactory.getService(IRemoteServicesManager.class);
</pre>

=== Obtaining a IRemoteConnection ===
To obtain an '''IRemoteConnection''' instance use the method '''TmfRemoteConnectionFactory.getRemoteConnection(String remoteServicesId, String name)''', where ''remoteServicesId'' is the ID of service ID for the connection, and ''name'' the name of the connection. For built-in SSH the ''remoteServicesId'' is "org.eclipse.remote.JSch".

<pre>
IRemoteConnection connection = TmfRemoteConnectionFactory.getRemoteConnection("org.eclipse.remote.JSch", "My Connection");
</pre>

Note that the connection needs to be created beforehand using the Remote Connection wizard implementation ('''Window -> Preferences -> Remote Development -> Remote Connection''') in the Eclipse application that executes this plug-in. For more information about creating connections using the Remote Connections feature of PTP refer to [http://help.eclipse.org/luna/index.jsp?topic=%2Forg.eclipse.ptp.doc.user%2Fhtml%2FremoteTools.html&anchor=remote link]. Alternatively it can be created programmatically using the corresponding API of TMF ([[#Creating an IRemoteConnection instance]]).

To obtain an '''IRemoteConnection''' instance use method '''TmfRemoteConnectionFactory.getLocalConnection()'''.
<pre>
IRemoteConnection connection = TmfRemoteConnectionFactory.getLocalConnection();
</pre>

=== Creating an IRemoteConnection instance ===
It is possible to create an '''IRemoteConnection''' instance programmatically using the '''TmfRemoteConnectionFactory'''. Right now only build-in SSH or Local connection is supported.

To create an '''IRemoteConnection''' instance use the method '''createConnection(URI hostURI, String name)''' of class '''TmfRemoteConnectionFactory''', where ''hostURI'' is the URI of the remote connection, and ''name'' the name of the connection. For a built-in SSH use:
<pre>
import org.eclipse.remote.core.IRemoteConnection;
...
    try {
        URI hostUri = URIUtil.fromString("ssh://userID@127.0.0.1:22");
        IRemoteConnection connection = TmfRemoteConnectionFactory.createConnection(hostUri, "MyHost");
    } catch (URISyntaxException e) {
        return new Status(IStatus.ERROR, "my.plugin.id", "URI syntax error", e);
    } catch (RemoteConnectionException e) {
        return new Status(IStatus.ERROR, "my.plugin.id", "Connection cannot be created", e);
    }
...
</pre>

Note that if a connection already exists with the given name then this connection will be returned.

=== Providing a connection factory ===
Right now only build-in SSH or Local connection of PTP is supported. If one wants to provide another connection factory with a different remote service implementation use the interface '''IConnectionFactory''' to implement a new connection factory class. Then, register the new factory to '''TmfRemoteConnectionFactory''' using method '''registerConnectionFactory(String connectionTypeId, IConnectionFactory factory)''', where ''connectionTypeId'' is a unique ID and ''factory'' is the corresponding connection factory implementation.

== RemoteSystemProxy ==
The purpose of the RemoteSystemProxy is to handle the connection state of '''IRemoteConnection''' (connect/disconnect). Before opening a connection it checks if the connection had been open previously. If it was open, disconnecting the proxy will not close the connection. This is useful if multiple components using the same connection at the same time for different features (e.g. Tracer Control and remote fetching of traces) without impacting each other.

=== Creating a RemoteSystemProxy ===
Once one has an '''IRemoteConnection''' instance a '''RemoteSystemProxy''' can be constructed by:
<pre>
// Get local connection (for example)
IRemoteConnection connection = TmfRemoteConnectionFactory.getLocalConnection();
RemoteSystemProxy proxy = new RemoteSystemProxy(connection);
</pre>

=== Opening the remote connection ===
To open the connection call method '''connect()''':
<pre>
    proxy.connect();
</pre>

This will open the connection. If the connection has been previously opened then it will immediately return.

=== Closing the remote connection ===
To close the connection call method '''disconnect()''':
<pre>
    proxy.disconnect();
</pre>

Note: This will close the connection if the connection was opened by this proxy. Otherwise it will stay open.

=== Disposing the remote connection ===
If a remote system proxy is not needed anymore the proxy instance needs to be disposed by calling method '''dispose()'''. This may close the connection if the connection was opened by this proxy. Otherwise it will stay open.

<pre>
    proxy.dispose();
</pre>

=== Checking the connection state ===

To check the connection state use method '''isConnected()''' of the '''RemoteSystemProxy''' class.

<pre>
    if (proxy.isConnected()) {
        // do something
    }
</pre>


=== Retrieving the IRemoteConnection instance ===
To retrieve the '''IRemoteConnection''' instance use the '''getRemoteConnection()''' method of the '''RemoteSystemProxy''' class. Using this instance relevant features of the remote connection implementation can be accessed, for example remote file service ('''IRemoteFileService''') or remote process service ('''IRemoteProcessService''').

<pre>
import org.eclipse.remote.core.IRemoteConnection;
import org.eclipse.remote.core.IRemoteFileService;
...
    IRemoteRemoteConnection connection = proxy.getRemoteConnection();
    IRemoteFileService fileService = connection.getService(IRemoteFileService.class);
    if (fileService != null) {
        // do something (e.g. download or upload a file)
    }
</pre>

<pre>
import org.eclipse.remote.core.IRemoteConnection;
import org.eclipse.remote.core.IRemoteFileService;
...
    IRemoteRemoteConnection connection = proxy.getRemoteConnection();
    IRemoteFileService processService = connection.getService(IRemoteProcessService.class);
    if (processService != null) {
        // do something (e.g. execute command)
    }
</pre>

=== Obtaining a command shell ===
The TMF remote API provides a Command shell implementation to execute remote command-line commands. To obtain a command-line shell use the RemoteSystemProxy. 

<pre>
import org.eclipse.remote.core.IRemoteConnection;
import org.eclipse.remote.core.IRemoteFileService;
import org.eclipse.tracecompass.tmf.remote.core.shell.ICommandShell
...
    ICommandShell shell = proxy.createCommandShell();
    ICommandInput command = fCommandShell.createCommand();
    command.add("ls");
    command.add("-l");
    ICommandResult result = shell.executeCommand(command, new NullProgressMonitor);
    System.out.println("Return value: " result.getResult());
    for (String line : result.getOutput()) {
        System.out.println(line);
    }
    for (String line : result.getErrorOutput()) {
        System.err.println(line);
    }
    shell.dispose();
</pre>

Note that the shell needs to be disposed if not needed anymore.

Note for creating a command with parameters using the '''CommandInput''' class, add the command and each parameter separately instead of using one single String.

= Performance Tests =

Performance testing allows to calculate some metrics (CPU time, Memory Usage, etc.) that some part of the code takes during its execution. These metrics can then be used as is for information on the system's execution, or they can be compared either with other execution scenarios, or previous runs of the same scenario, for instance, after some optimization has been done on the code.

For automatic performance metric computation, we use the ''org.eclipse.test.performance'' plugin, provided by the Eclipse Test Feature.

== Add performance tests ==

=== Where ===

Performance tests are unit tests and they are added to the corresponding unit tests plugin. To separate performance tests from unit tests, a separate source folder, typically named ''perf'', is added to the plug-in.

Tests are to be added to a package under the ''perf'' directory, the package name would typically match the name of the package it is testing. For each package, a class named '''AllPerfTests''' would list all the performance tests classes inside this package. And like for unit tests, a class named '''AllPerfTests''' for the plug-in would list all the packages' '''AllPerfTests''' classes.

When adding performance tests for the first time in a plug-in, the plug-in's '''AllPerfTests''' class should be added to the global list of performance tests, found in package ''org.eclipse.tracecompass.alltests'', in class '''RunAllPerfTests'''. This will ensure that performance tests for the plug-in are run along with the other performance tests

=== How ===

TMF is using the org.eclipse.test.performance framework for performance tests. Using this, performance metrics are automatically taken and, if many runs of the tests are run, average and standard deviation are automatically computed. Results can optionally be stored to a database for later use.

Here is an example of how to use the test framework in a performance test:

<pre>
public class AnalysisBenchmark {

    private static final String TEST_ID = "org.eclipse.linuxtools#LTTng kernel analysis";
    private static final CtfTmfTestTrace testTrace = CtfTmfTestTrace.TRACE2;
    private static final int LOOP_COUNT = 10;

    /**
     * Performance test
     */
    @Test
    public void testTrace() {
        assumeTrue(testTrace.exists());

        /** Create a new performance meter for this scenario */
        Performance perf = Performance.getDefault();
        PerformanceMeter pm = perf.createPerformanceMeter(TEST_ID);

        /** Optionally, tag this test for summary or global summary on a given dimension */
        perf.tagAsSummary(pm, "LTTng Kernel Analysis", Dimension.CPU_TIME);
        perf.tagAsGlobalSummary(pm, "LTTng Kernel Analysis", Dimension.CPU_TIME);

        /** The test will be run LOOP_COUNT times */
        for (int i = 0; i < LOOP_COUNT; i++) {

            /** Start each run of the test with new objects to avoid different code paths */
            try (IAnalysisModule module = new KernelAnalysis();
                    LttngKernelTrace trace = new LttngKernelTrace()) {
                module.setId("test");
                trace.initTrace(null, testTrace.getPath(), CtfTmfEvent.class);
                module.setTrace(trace);

                /** The analysis execution is being tested, so performance metrics
                 * are taken before and after the execution */
                pm.start();
                TmfTestHelper.executeAnalysis(module);
                pm.stop();

                /*
                 * Delete the supplementary files, so next iteration rebuilds
                 * the state system.
                 */
                File suppDir = new File(TmfTraceManager.getSupplementaryFileDir(trace));
                for (File file : suppDir.listFiles()) {
                    file.delete();
                }

            } catch (TmfAnalysisException | TmfTraceException e) {
                fail(e.getMessage());
            }
        }

        /** Once the test has been run many times, committing the results will
         * calculate average, standard deviation, and, if configured, save the
         * data to a database */
        pm.commit();
    }
}

</pre>

For more information, see [http://wiki.eclipse.org/Performance/Automated_Tests The Eclipse Performance Test How-to]

Some rules to help write performance tests are explained in section [[#ABC of performance testing | ABC of performance testing]].

=== Run a performance test ===

Performance tests are unit tests, so, just like unit tests, they can be run by right-clicking on a performance test class and selecting ''Run As'' -> ''Junit Plug-in Test''.

By default, if no database has been configured, results will be displayed in the Console at the end of the test.

Here is the sample output from the test described in the previous section. It shows all the metrics that have been calculated during the test.

<pre>
Scenario 'org.eclipse.linuxtools#LTTng kernel analysis' (average over 10 samples):
  System Time:            3.04s         (95% in [2.77s, 3.3s])         Measurable effect: 464ms (1.3 SDs) (required sample size for an effect of 5% of mean: 94)
  Used Java Heap:        -1.43M         (95% in [-33.67M, 30.81M])     Measurable effect: 57.01M (1.3 SDs) (required sample size for an effect of 5% of stdev: 6401)
  Working Set:           14.43M         (95% in [-966.01K, 29.81M])    Measurable effect: 27.19M (1.3 SDs) (required sample size for an effect of 5% of stdev: 6400)
  Elapsed Process:        3.04s         (95% in [2.77s, 3.3s])         Measurable effect: 464ms (1.3 SDs) (required sample size for an effect of 5% of mean: 94)
  Kernel time:             621ms        (95% in [586ms, 655ms])        Measurable effect: 60ms (1.3 SDs) (required sample size for an effect of 5% of mean: 39)
  CPU Time:               6.06s         (95% in [5.02s, 7.09s])        Measurable effect: 1.83s (1.3 SDs) (required sample size for an effect of 5% of mean: 365)
  Hard Page Faults:          0          (95% in [0, 0])                Measurable effect: 0 (1.3 SDs) (required sample size for an effect of 5% of stdev: 6400)
  Soft Page Faults:       9.27K         (95% in [3.28K, 15.27K])       Measurable effect: 10.6K (1.3 SDs) (required sample size for an effect of 5% of mean: 5224)
  Text Size:                 0          (95% in [0, 0])
  Data Size:                 0          (95% in [0, 0])
  Library Size:           32.5M         (95% in [-12.69M, 77.69M])     Measurable effect: 79.91M (1.3 SDs) (required sample size for an effect of 5% of stdev: 6401)
</pre>

Results from performance tests can be saved automatically to a derby database. Derby can be run either in embedded mode, locally on a machine, or on a server. More information on setting up derby for performance tests can be found here: [http://wiki.eclipse.org/Performance/Automated_Tests The Eclipse Performance Test How-to]. The following documentation will show how to configure an Eclipse run configuration to store results on a derby database located on a server.

Note that to store results in a derby database, the ''org.apache.derby'' plug-in must be available within your Eclipse. Since it is an optional dependency, it is not included in the target definition. It can be installed via the '''Orbit''' repository, in ''Help'' -> ''Install new software...''. If the '''Orbit''' repository is not listed, click on the latest one from [http://download.eclipse.org/tools/orbit/downloads/] and copy the link under ''Orbit Build Repository''.

To store the data to a database, it needs to be configured in the run configuration. In ''Run'' -> ''Run configurations..'', under ''Junit Plug-in Test'', find the run configuration that corresponds to the test you wish to run, or create one if it is not present yet.

In the ''Arguments'' tab, in the box under ''VM Arguments'', add on separate lines the following information

<pre>
-Declipse.perf.dbloc=//javaderby.dorsal.polymtl.ca
-Declipse.perf.config=build=mybuild;host=myhost;config=linux;jvm=1.7
</pre>

The ''eclipse.perf.dbloc'' parameter is the url (or filename) of the derby database. The database is by default named ''perfDB'', with username and password ''guest''/''guest''. If the database does not exist, it will be created, initialized and populated.

The ''eclipse.perf.config'' parameter identifies a '''variation''': It typically identifies the build on which is it run (commitId and/or build date, etc.), the machine (host) on which it is run, the configuration of the system (for example Linux or Windows), the jvm, etc. That parameter is a list of ';' separated key-value pairs. To be backward-compatible with the Eclipse Performance Tests Framework, the 4 keys mentioned above are mandatory, but any key-value pairs can be used.

== ABC of performance testing ==

Here follow some rules to help design good and meaningful performance tests.

=== Determine what to test ===

For tests to be significant, it is important to choose what exactly is to be tested and make sure it is reproducible every run. To limit the amount of noise caused by the TMF framework, the performance test code should be tweaked so that only the method under test is run. For instance, a trace should not be "opened" (by calling the ''traceOpened()'' method) to test an analysis, since the ''traceOpened'' method will also trigger the indexing and the execution of all applicable automatic analysis.

For each code path to test, multiple scenarios can be defined. For instance, an analysis could be run on different traces, with different sizes. The results will show how the system scales and/or varies depending on the objects it is executed on.

The number of '''samples''' used to compute the results is also important. The code to test will typically be inside a '''for''' loop that runs exactly the same code each time for a given number of times. All objects used for the test must start in the same state at each iteration of the loop. For instance, any trace used during an execution should be disposed of at the end of the loop, and any supplementary file that may have been generated in the run should be deleted.

Before submitting a performance test to the code review, you should run it a few times (with results in the Console) and see if the standard deviation is not too large and if the results are reproducible.

=== Metrics descriptions and considerations ===

CPU time: CPU time represent the total time spent on CPU by the current process, for the time of the test execution. It is the sum of the time spent by all threads. On one hand, it is more significant than the elapsed time, since it should be the same no matter how many CPU cores the computer has. But since it calculates the time of every thread, one has to make sure that only threads related to what is being tested are executed during that time, or else the results will include the times of those other threads. For an application like TMF, it is hard to control all the threads, and empirically, it is found to vary a lot more than the system time from one run to the other.

System time (Elapsed time): The time between the start and the end of the execution. It will vary depending on the parallelization of the threads and the load of the machine.

Kernel time: Time spent in kernel mode

Used Java Heap: It is the difference between the memory used at the beginning of the execution and at the end. This metric may be useful to calculate the overall size occupied by the data generated by the test run, by forcing a garbage collection before taking the metrics at the beginning and at the end of the execution. But it will not show the memory used throughout the execution. There can be a large standard deviation. The reason for this is  that when benchmarking methods that trigger tasks in different threads, like signals and/or analysis, these other threads might be in various states at each run of the test, which will impact the memory usage calculated. When using this metric, either make sure the method to test does not trigger external threads or make sure you wait for them to finish.

= Network Tracing =

== Adding a protocol ==

Supporting a new network protocol in TMF is straightforward. Minimal effort is required to support new protocols. In this tutorial, the UDP protocol will be added to the list of supported protocols.

=== Architecture ===

All the TMF pcap-related code is divided in three projects (not considering the tests plugins):
* '''org.eclipse.tracecompass.pcap.core''', which contains the parser that will read pcap files and constructs the different packets from a ByteBuffer. It also contains means to build packet streams, which are conversation (list of packets) between two endpoints. To add a protocol, almost all of the work will be in that project.
* '''org.eclipse.tracecompass.tmf.pcap.core''', which contains TMF-specific concepts and act as a wrapper between TMF and the pcap parsing library. It only depends on org.eclipse.tracecompass.tmf.core and org.eclipse.tracecompass.pcap.core. To add a protocol, one file must be edited in this project.
* '''org.eclipse.tracecompass.tmf.pcap.ui''', which contains all TMF pcap UI-specific concepts, such as the views and perspectives. No work is needed in that project.

=== UDP Packet Structure ===

The UDP is a transport-layer protocol that does not guarantee message delivery nor in-order message reception. A UDP packet (datagram) has the following [http://en.wikipedia.org/wiki/User_Datagram_Protocol#Packet_structure structure]:

{| class="wikitable" style="margin: 0 auto; text-align: center;"
|-
! style="border-bottom:none; border-right:none;"| ''Offsets''
! style="border-left:none;"| Octet
! colspan="8" | 0
! colspan="8" | 1
! colspan="8" | 2
! colspan="8" | 3
|-
! style="border-top: none" | Octet
! <tt>Bit</tt>!!<tt>&nbsp;0</tt>!!<tt>&nbsp;1</tt>!!<tt>&nbsp;2</tt>!!<tt>&nbsp;3</tt>!!<tt>&nbsp;4</tt>!!<tt>&nbsp;5</tt>!!<tt>&nbsp;6</tt>!!<tt>&nbsp;7</tt>!!<tt>&nbsp;8</tt>!!<tt>&nbsp;9</tt>!!<tt>10</tt>!!<tt>11</tt>!!<tt>12</tt>!!<tt>13</tt>!!<tt>14</tt>!!<tt>15</tt>!!<tt>16</tt>!!<tt>17</tt>!!<tt>18</tt>!!<tt>19</tt>!!<tt>20</tt>!!<tt>21</tt>!!<tt>22</tt>!!<tt>23</tt>!!<tt>24</tt>!!<tt>25</tt>!!<tt>26</tt>!!<tt>27</tt>!!<tt>28</tt>!!<tt>29</tt>!!<tt>30</tt>!!<tt>31</tt>
|-
! 0
!<tt> 0</tt>
| colspan="16" style="background:#fdd;"| Source port || colspan="16"| Destination port
|-
! 4
!<tt>32</tt>
| colspan="16"| Length  || colspan="16" style="background:#fdd;"| Checksum
|}

Knowing that, we can define an UDPPacket class that contains those fields.

=== Creating the UDPPacket ===

First, in org.eclipse.tracecompass.pcap.core, create a new package named '''org.eclipse.tracecompass.pcap.core.protocol.name''' with name being the name of the new protocol. In our case name is udp so we create the package '''org.eclipse.tracecompass.pcap.core.protocol.udp'''. All our work is going in this package.

In this package, we create a new class named UDPPacket that extends Packet. All new protocol must define a packet type that extends the abstract class Packet. We also add different fields:
* ''Packet'' '''fChildPacket''', which is the packet encapsulated by this UDP packet, if it exists. This field will be initialized by findChildPacket().
* ''ByteBuffer'' '''fPayload''', which is the payload of this packet. Basically, it is the UDP packet without its header.
* ''int'' '''fSourcePort''', which is an unsigned 16-bits field, that contains the source port of the packet (see packet structure).
* ''int'' '''fDestinationPort''', which is an unsigned 16-bits field, that contains the destination port of the packet (see packet structure).
* ''int'' '''fTotalLength''', which is an unsigned 16-bits field, that contains the total length (header + payload) of the packet.
* ''int'' '''fChecksum''', which is an unsigned 16-bits field, that contains a checksum to verify the integrity of the data.
* ''UDPEndpoint'' '''fSourceEndpoint''', which contains the source endpoint of the UDPPacket. The UDPEndpoint class will be created later in this tutorial.
* ''UDPEndpoint'' '''fDestinationEndpoint''', which contains the destination endpoint of the UDPPacket.
* ''ImmutableMap<String, String>'' '''fFields''', which is a map that contains all the packet fields (see in data structure) which assign a field name with its value. Those values will be displayed on the UI.

We also create the UDPPacket(PcapFile file, @Nullable Packet parent, ByteBuffer packet) constructor. The parameters are:
* ''PcapFile'' '''file''', which is the pcap file to which this packet belongs.
* ''Packet'' '''parent''', which is the packet encasulating this UDPPacket
* ''ByteBuffer'' '''packet''', which is a ByteBuffer that contains all the data necessary to initialize the fields of this UDPPacket. We will retrieve bytes from it during object construction.

The following class is obtained:

<pre>
package org.eclipse.tracecompass.pcap.core.protocol.udp;

import java.nio.ByteBuffer;
import java.util.Map;

import org.eclipse.tracecompass.internal.pcap.core.endpoint.ProtocolEndpoint;
import org.eclipse.tracecompass.internal.pcap.core.packet.BadPacketException;
import org.eclipse.tracecompass.internal.pcap.core.packet.Packet;

public class UDPPacket extends Packet {

    private final @Nullable Packet fChildPacket;
    private final @Nullable ByteBuffer fPayload;

    private final int fSourcePort;
    private final int fDestinationPort;
    private final int fTotalLength;
    private final int fChecksum;

    private @Nullable UDPEndpoint fSourceEndpoint;
    private @Nullable UDPEndpoint fDestinationEndpoint;

    private @Nullable ImmutableMap<String, String> fFields;

    /**
     * Constructor of the UDP Packet class.
     *
     * @param file
     *            The file that contains this packet.
     * @param parent
     *            The parent packet of this packet (the encapsulating packet).
     * @param packet
     *            The entire packet (header and payload).
     * @throws BadPacketException
     *             Thrown when the packet is erroneous.
     */
    public UDPPacket(PcapFile file, @Nullable Packet parent, ByteBuffer packet) throws BadPacketException {
        super(file, parent, PcapProtocol.UDP);
        // TODO Auto-generated constructor stub
    }


    @Override
    public Packet getChildPacket() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public ByteBuffer getPayload() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public boolean validate() {
        // TODO Auto-generated method stub
        return false;
    }

    @Override
    protected Packet findChildPacket() throws BadPacketException {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public ProtocolEndpoint getSourceEndpoint() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public ProtocolEndpoint getDestinationEndpoint() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public Map<String, String> getFields() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public String getLocalSummaryString() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    protected String getSignificationString() {
        // TODO Auto-generated method stub
        return null;
    }

    @Override
    public boolean equals(Object obj) {
        // TODO Auto-generated method stub
        return false;
    }

    @Override
    public int hashCode() {
        // TODO Auto-generated method stub
        return 0;
    }

}
</pre>

Now, we implement the constructor. It is done in four steps:
* We initialize fSourceEndpoint, fDestinationEndpoint and fFields to null, since those are lazy-loaded. This allows faster construction of the packet and thus faster parsing.
* We initialize fSourcePort, fDestinationPort, fTotalLength, fChecksum using ByteBuffer packet. Thanks to the packet data structure, we can simply retrieve packet.getShort() to get the value. Since there is no unsigned in Java, special care is taken to avoid negative number. We use the utility method ConversionHelper.unsignedShortToInt() to convert it to an integer, and initialize the fields.
* Now that the header is parsed, we take the rest of the ByteBuffer packet to initialize the payload, if there is one. To do this, we simply generate a new ByteBuffer starting from the current position.
* We initialize the field fChildPacket using the method findChildPacket()

The following constructor is obtained:
<pre>
    public UDPPacket(PcapFile file, @Nullable Packet parent, ByteBuffer packet) throws BadPacketException {
        super(file, parent, Protocol.UDP);

        // The endpoints and fFields are lazy loaded. They are defined in the get*Endpoint()
        // methods.
        fSourceEndpoint = null;
        fDestinationEndpoint = null;
        fFields = null;

        // Initialize the fields from the ByteBuffer
        packet.order(ByteOrder.BIG_ENDIAN);
        packet.position(0);

        fSourcePort = ConversionHelper.unsignedShortToInt(packet.getShort());
        fDestinationPort = ConversionHelper.unsignedShortToInt(packet.getShort());
        fTotalLength = ConversionHelper.unsignedShortToInt(packet.getShort());
        fChecksum = ConversionHelper.unsignedShortToInt(packet.getShort());

        // Initialize the payload
        if (packet.array().length - packet.position() > 0) {
            byte[] array = new byte[packet.array().length - packet.position()];
            packet.get(array);

            ByteBuffer payload = ByteBuffer.wrap(array);
            payload.order(ByteOrder.BIG_ENDIAN);
            payload.position(0);
            fPayload = payload;
        } else {
            fPayload = null;
        }

        // Find child
        fChildPacket = findChildPacket();

    }
</pre>

Then, we implement the following methods:
* ''public Packet'' '''getChildPacket()''': simple getter of fChildPacket
* ''public ByteBuffer'' '''getPayload()''': simple getter of fPayload
* ''public boolean'' '''validate()''': method that checks if the packet is valid. In our case, the packet is valid if the retrieved checksum fChecksum and the real checksum (that we can compute using the fields and payload of UDPPacket) are the same.
* ''protected Packet'' '''findChildPacket()''': method that create a new packet if a encapsulated protocol is found. For instance, based on the fDestinationPort, it could determine what the encapsulated protocol is and creates a new packet object.
* ''public ProtocolEndpoint'' '''getSourceEndpoint()''': method that initializes and returns the source endpoint.
* ''public ProtocolEndpoint'' '''getDestinationEndpoint()''': method that initializes and returns the destination endpoint.
* ''public Map<String, String>'' '''getFields()''': method that initializes and returns the map containing the fields matched to their value.
* ''public String'' '''getLocalSummaryString()''': method that returns a string summarizing the most important fields of the packet. There is no need to list all the fields, just the most important one. This will be displayed on UI.
* ''protected String'' '''getSignificationString()''': method that returns a string describing the meaning of the packet. If there is no particular meaning, it is possible to return getLocalSummaryString().
* public boolean'' '''equals(Object obj)''': Object's equals method.
* public int'' '''hashCode()''': Object's hashCode method.

We get the following code:
<pre>
    @Override
    public @Nullable Packet getChildPacket() {
        return fChildPacket;
    }

    @Override
    public @Nullable ByteBuffer getPayload() {
        return fPayload;
    }

    /**
     * Getter method that returns the UDP Source Port.
     *
     * @return The source Port.
     */
    public int getSourcePort() {
        return fSourcePort;
    }

    /**
     * Getter method that returns the UDP Destination Port.
     *
     * @return The destination Port.
     */
    public int getDestinationPort() {
        return fDestinationPort;
    }

    /**
     * {@inheritDoc}
     *
     * See http://www.iana.org/assignments/service-names-port-numbers/service-
     * names-port-numbers.xhtml or
     * http://en.wikipedia.org/wiki/List_of_TCP_and_UDP_port_numbers
     */
    @Override
    protected @Nullable Packet findChildPacket() throws BadPacketException {
        // When more protocols are implemented, we can simply do a switch on the fDestinationPort field to find the child packet.
        // For instance, if the destination port is 80, then chances are the HTTP protocol is encapsulated. We can create a new HTTP
        // packet (after some verification that it is indeed the HTTP protocol).
        ByteBuffer payload = fPayload;
        if (payload == null) {
            return null;
        }

        return new UnknownPacket(getPcapFile(), this, payload);
    }

    @Override
    public boolean validate() {
        // Not yet implemented. ATM, we consider that all packets are valid.
        // TODO Implement it. We can compute the real checksum and compare it to fChecksum.
        return true;
    }

    @Override
    public UDPEndpoint getSourceEndpoint() {
        @Nullable
        UDPEndpoint endpoint = fSourceEndpoint;
        if (endpoint == null) {
            endpoint = new UDPEndpoint(this, true);
        }
        fSourceEndpoint = endpoint;
        return fSourceEndpoint;
    }

    @Override
    public UDPEndpoint getDestinationEndpoint() {
        @Nullable UDPEndpoint endpoint = fDestinationEndpoint;
        if (endpoint == null) {
            endpoint = new UDPEndpoint(this, false);
        }
        fDestinationEndpoint = endpoint;
        return fDestinationEndpoint;
    }

    @Override
    public Map<String, String> getFields() {
        ImmutableMap<String, String> map = fFields;
        if (map == null) {
            @SuppressWarnings("null")
            @NonNull ImmutableMap<String, String> newMap = ImmutableMap.<String, String> builder()
                    .put("Source Port", String.valueOf(fSourcePort)) //$NON-NLS-1$
                    .put("Destination Port", String.valueOf(fDestinationPort)) //$NON-NLS-1$
                    .put("Length", String.valueOf(fTotalLength) + " bytes") //$NON-NLS-1$ //$NON-NLS-2$
                    .put("Checksum", String.format("%s%04x", "0x", fChecksum)) //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
                    .build();
            fFields = newMap;
            return newMap;
        }
        return map;
    }

    @Override
    public String getLocalSummaryString() {
        return "Src Port: " + fSourcePort + ", Dst Port: " + fDestinationPort; //$NON-NLS-1$ //$NON-NLS-2$
    }

    @Override
    protected String getSignificationString() {
        return "Source Port: " + fSourcePort + ", Destination Port: " + fDestinationPort; //$NON-NLS-1$ //$NON-NLS-2$
    }

    @Override
    public int hashCode() {
        final int prime = 31;
        int result = 1;
        result = prime * result + fChecksum;
        final Packet child = fChildPacket;
        if (child != null) {
            result = prime * result + child.hashCode();
        } else {
            result = prime * result;
        }
        result = prime * result + fDestinationPort;
        final ByteBuffer payload = fPayload;
        if (payload != null) {
            result = prime * result + payload.hashCode();
        } else {
            result = prime * result;
        }
        result = prime * result + fSourcePort;
        result = prime * result + fTotalLength;
        return result;
    }

    @Override
    public boolean equals(@Nullable Object obj) {
        if (this == obj) {
            return true;
        }
        if (obj == null) {
            return false;
        }
        if (getClass() != obj.getClass()) {
            return false;
        }
        UDPPacket other = (UDPPacket) obj;
        if (fChecksum != other.fChecksum) {
            return false;
        }
        final Packet child = fChildPacket;
        if (child != null) {
            if (!child.equals(other.fChildPacket)) {
                return false;
            }
        } else {
            if (other.fChildPacket != null) {
                return false;
            }
        }
        if (fDestinationPort != other.fDestinationPort) {
            return false;
        }
        final ByteBuffer payload = fPayload;
        if (payload != null) {
            if (!payload.equals(other.fPayload)) {
                return false;
            }
        } else {
            if (other.fPayload != null) {
                return false;
            }
        }
        if (fSourcePort != other.fSourcePort) {
            return false;
        }
        if (fTotalLength != other.fTotalLength) {
            return false;
        }
        return true;
    }
</pre>

The UDPPacket class is implemented. We now have the define the UDPEndpoint.

=== Creating the UDPEndpoint ===

For the UDP protocol, an endpoint will be its source or its destination port, depending if it is the source endpoint or destination endpoint. Knowing that, we can create our UDPEndpoint class.

We create in our package a new class named UDPEndpoint that extends ProtocolEndpoint. We also add a field: fPort, which contains the source or destination port. We finally add a constructor public ExampleEndpoint(Packet packet, boolean isSourceEndpoint):
* ''Packet'' '''packet''': the packet to build the endpoint from.
* ''boolean'' '''isSourceEndpoint''': whether the endpoint is the source endpoint or destination endpoint.

We obtain the following unimplemented class:

<pre>
package org.eclipse.tracecompass.pcap.core.protocol.udp;

import org.eclipse.tracecompass.internal.pcap.core.endpoint.ProtocolEndpoint;
import org.eclipse.tracecompass.internal.pcap.core.packet.Packet;

public class UDPEndpoint extends ProtocolEndpoint {

    private final int fPort;

    public UDPEndpoint(Packet packet, boolean isSourceEndpoint) {
        super(packet, isSourceEndpoint);
        // TODO Auto-generated constructor stub
    }

    @Override
    public int hashCode() {
        // TODO Auto-generated method stub
        return 0;
    }

    @Override
    public boolean equals(Object obj) {
        // TODO Auto-generated method stub
        return false;
    }

    @Override
    public String toString() {
        // TODO Auto-generated method stub
        return null;
    }

}
</pre>

For the constructor, we simply initialize fPort. If isSourceEndpoint is true, then we take packet.getSourcePort(), else we take packet.getDestinationPort().

<pre>
    /**
     * Constructor of the {@link UDPEndpoint} class. It takes a packet to get
     * its endpoint. Since every packet has two endpoints (source and
     * destination), the isSourceEndpoint parameter is used to specify which
     * endpoint to take.
     *
     * @param packet
     *            The packet that contains the endpoints.
     * @param isSourceEndpoint
     *            Whether to take the source or the destination endpoint of the
     *            packet.
     */
    public UDPEndpoint(UDPPacket packet, boolean isSourceEndpoint) {
        super(packet, isSourceEndpoint);
        fPort = isSourceEndpoint ? packet.getSourcePort() : packet.getDestinationPort();
    }
</pre>

Then we implement the methods:
* ''public int'' '''hashCode()''': method that returns an integer based on the fields value. In our case, it will return an integer depending on fPort, and the parent endpoint that we can retrieve with getParentEndpoint().
* ''public boolean'' '''equals(Object obj)''': method that returns true if two objects are equals. In our case, two UDPEndpoints are equal if they both have the same fPort and have the same parent endpoint that we can retrieve with getParentEndpoint().
* ''public String'' '''toString()''': method that returns a description of the UDPEndpoint as a string. In our case, it will be a concatenation of the string of the parent endpoint and fPort as a string.

<pre>
    @Override
    public int hashCode() {
        final int prime = 31;
        int result = 1;
        ProtocolEndpoint endpoint = getParentEndpoint();
        if (endpoint == null) {
            result = 0;
        } else {
            result = endpoint.hashCode();
        }
        result = prime * result + fPort;
        return result;
    }

    @Override
    public boolean equals(@Nullable Object obj) {
        if (this == obj) {
            return true;
        }
        if (!(obj instanceof UDPEndpoint)) {
            return false;
        }

        UDPEndpoint other = (UDPEndpoint) obj;

        // Check on layer
        boolean localEquals = (fPort == other.fPort);
        if (!localEquals) {
            return false;
        }

        // Check above layers.
        ProtocolEndpoint endpoint = getParentEndpoint();
        if (endpoint != null) {
            return endpoint.equals(other.getParentEndpoint());
        }
        return true;
    }

    @Override
    public String toString() {
        ProtocolEndpoint endpoint = getParentEndpoint();
        if (endpoint == null) {
            @SuppressWarnings("null")
            @NonNull String ret = String.valueOf(fPort);
            return ret;
        }
        return endpoint.toString() + '/' + fPort;
    }
</pre>

=== Registering the UDP protocol ===

The last step is to register the new protocol. There are three places where the protocol has to be registered. First, the parser has to know that a new protocol has been added. This is defined in the enum org.eclipse.tracecompass.internal.pcap.core.protocol.PcapProtocol. Simply add the protocol name here, along with a few arguments:
* ''String'' '''longname''', which is the long version of name of the protocol. In our case, it is "User Datagram Protocol".
* ''String'' '''shortName''', which is the shortened name of the protocol. In our case, it is "UDP".
* ''Layer'' '''layer''', which is the layer to which the protocol belongs in the OSI model. In our case, this is the layer 4.
* ''boolean'' '''supportsStream''', which defines whether or not the protocol supports packet streams. In our case, this is set to true.

Thus, the following line is added in the PcapProtocol enum:
<pre>
    UDP("User Datagram Protocol", "udp", Layer.LAYER_4, true),
</pre>

Also, TMF has to know about the new protocol. This is defined in org.eclipse.tracecompass.internal.tmf.pcap.core.protocol.TmfPcapProtocol. We simply add it, with a reference to the corresponding protocol in PcapProtocol. Thus, the following line is added in the TmfPcapProtocol enum:
<pre>
    UDP(PcapProtocol.UDP),
</pre>

You will also have to update the ''ProtocolConversion'' class to register the protocol in the switch statements. Thus, for UDP, we add:
<pre>
    case UDP:
        return TmfPcapProtocol.UDP;
</pre>
and
<pre>
    case UDP:
        return PcapProtocol.UDP;
</pre>

Finally, all the protocols that could be the parent of the new protocol (in our case, IPv4 and IPv6) have to be notified of the new protocol. This is done by modifying the findChildPacket() method of the packet class of those protocols. For instance, in IPv4Packet, we add a case in the switch statement of findChildPacket, if the Protocol number matches UDP's protocol number at the network layer:
<pre>
    @Override
    protected @Nullable Packet findChildPacket() throws BadPacketException {
        ByteBuffer payload = fPayload;
        if (payload == null) {
            return null;
        }

        switch (fIpDatagramProtocol) {
        case IPProtocolNumberHelper.PROTOCOL_NUMBER_TCP:
            return new TCPPacket(getPcapFile(), this, payload);
        case IPProtocolNumberHelper.PROTOCOL_NUMBER_UDP:
            return new UDPPacket(getPcapFile(), this, payload);
        default:
            return new UnknownPacket(getPcapFile(), this, payload);
        }
    }
</pre>

The new protocol has been added. Running TMF should work just fine, and the new protocol is now recognized.

== Adding stream-based views ==

To add a stream-based View, simply monitor the TmfPacketStreamSelectedSignal in your view. It contains the new stream that you can retrieve with signal.getStream(). You must then make an event request to the current trace to get the events, and use the stream to filter the events of interest. Therefore, you must also monitor TmfTraceOpenedSignal, TmfTraceClosedSignal and TmfTraceSelectedSignal. Examples of stream-based views include a view that represents the packets as a sequence diagram, or that shows the TCP connection state based on the packets SYN/ACK/FIN/RST flags. A (very very very early) draft of such a view can be found at https://git.eclipse.org/r/#/c/31054/.

== TODO ==

* Add more protocols. At the moment, only four protocols are supported. The following protocols would need to be implemented: ARP, SLL, WLAN, USB, IPv6, ICMP, ICMPv6, IGMP, IGMPv6, SCTP, DNS, FTP, HTTP, RTP, SIP, SSH and Telnet. Other VoIP protocols would be nice.
* Add a network graph view. It would be useful to produce graphs that are meaningful to network engineers, and that they could use (for presentation purpose, for instance). We could use the XML-based analysis to do that!
* Add a Stream Diagram view. This view would represent a stream as a Sequence Diagram. It would be updated when a TmfNewPacketStreamSignal is thrown. It would be easy to see the packet exchange and the time delta between each packet. Also, when a packet is selected in the Stream Diagram, it should be selected in the event table and its content should be shown in the Properties View. See https://git.eclipse.org/r/#/c/31054/ for a draft of such a view.
* Make adding protocol more "plugin-ish", via extension points for instance. This would make it easier to support new protocols, without modifying the source code.
* Control dumpcap directly from eclipse, similar to how LTTng is controlled in the Control View.
* Support pcapng. See: http://www.winpcap.org/ntar/draft/PCAP-DumpFileFormat.html for the file format.
* Add SWTBOT tests to org.eclipse.tracecompass.tmf.pcap.ui
* Add a Raw Viewer, similar to Wireshark. We could use the “Show Raw” in the event editor to do that.
* Externalize strings in org.eclipse.tracecompass.pcap.core. At the moment, all the strings are hardcoded. It would be good to externalize them all.

= Markers =

Markers are annotations that are defined with a time range, a color, a category and an optional label. The markers are displayed in the time graph of any view that extends ''AbstractTimeGraphView''. The markers are drawn as a line or a region (in case the time range duration is not zero) of the given color, which can have an alpha value to use transparency. The markers can be drawn in the foreground (above time graph states) or in the background (below time graph states). An optional label can be drawn in the the time scale area.

The developer can add trace-specific markers and/or view-specific markers.

== Trace-specific markers ==

Trace-specific markers can be added by registering an ''IAdapterFactory'' with the TmfTraceAdapterManager. The adapter factory must provide adapters of the ''IMarkerEventSource'' class for a given ''ITmfTrace'' object. The adapter factory can be registered for traces of a certain class (which will include sub-classes of the given class) or it can be registered for traces of a certain trace type id (as defined in the ''org.eclipse.linuxtools.tmf.core.tracetype'' extension point).

The adapter factory can be registered in the ''Activator'' of the plug-in that introduces it, in the ''start()'' method, and unregistered in the ''stop()'' method.

It is recommended to extend the ''AbstractTmfTraceAdapterFactory'' class when creating the adapter factory. This will ensure that a single instance of the adapter is created for a specific trace and reused by all components that need the adapter, and that the adapter is disposed when the trace is closed.

The adapter implementing the ''IMarkerEventSource'' interface must provide two methods:

* ''getMarkerCategories()'' returns a list of category names which will be displayed to the user, who can then enable or disable markers on a per-category basis.

* ''getMarkerList()'' returns a list of markers instances of class ''IMarkerEvent'' for the given category and time range. The resolution can be used to limit the number of markers returned for the current zoom level, and the progress monitor can be checked for early cancellation of the marker computation.

The trace-specific markers for a particular trace will appear in all views extending ''AbstractTimeGraphView'' when that trace (or an experiment containing that trace) is selected.

An example of a trace-specific markers implementation can be seen by examining classes ''LostEventsMarkerEventSourceFactory'', ''LostEventsMarkerEventSource'' and ''Activator'' in the ''org.eclipse.tracecompass.tmf.ui'' plug-in.

== View-specific markers ==

View-specific markers can by added in sub-classes of ''AbstractTimeGraphView'' by implementing the following two methods:

* ''getViewMarkerCategories()'' returns a list of category names which will be displayed to the user, who can then enable or disable markers on a per-category basis.

* ''getViewMarkerList()'' returns a list of markers instances of class ''IMarkerEvent'' for the given time range. The resolution can be used to limit the number of markers returned for the current zoom level, and the progress monitor can be checked for early cancellation of the marker computation.

= Virtual Machine Analysis =

''Note'': The Virtual Machine Analysis that was previously part of Trace Compass has moved to the Trace Compass Incubator where it is undergoing active development. The analyses that were previously in Trace Compass are now available as part of the "Virtual Machine And Container Analysis" feature of the Incubator.

Please refer to [https://wiki.eclipse.org/Trace_Compass/Incubator_Guidelines the incubator development documentation] for how to contribute to the Incubator.

= JUL Logging =

Logging can be quite useful to debug a class, see its interactions with other components and understand the behavior of the system. TraceCompass uses JUL to log various events in the code, which can then be used to model and analyze the system's workflow. Here are some guidelines to use logging efficiently in Trace Compass. See the User Documentation for instructions on how to enable logging and obtain traces.

=== Use a static logger for each class ===

Each class should define and use their own static logger like this:

    private static final Logger LOGGER = TraceCompassLog.getLogger(StateSystem.class);

It is then easy to filter the components to log by their full class name. The ''TraceCompassLog#getLogger'' method is a wrapper for ''java.util.logging.Logger#getLogger'', but the Trace Compass's logging initialization (overriding the default's ConsoleHandler and INFO level for the org.eclipse.tracecompass namespace when logging is not enabled) is done in the static initializer of this class. Using the wrapper method ensures that this code is called and the user will not see Console message all over the place.

'''Note on abstract classes''': It is debatable whether to use a static logger with the abstract class name or a logger with the concrete class's name.

In the former case, logging for this class uses the classes's own namespace, but it is impossible to discriminate logging statement by concrete classes unless the concrete class name is added as parameter to the statement (when necessary).

The latter case has the advantage that one can log only the concrete class and see all that goes on in the abstract class as well, but the concrete class may be in another namespace and will not benefit from the ''TraceCompassLog'' logging initialization and the user will see console logging happen.

Both methods have their advantages and there is no clear good answer.

=== Use a message supplier ===

A logging statement, to be meaningful, will usually log a string that contains data from the context and will thus do string concatenation. This has a non-negligible overhead. To avoid having to do the costly string concatenation when the statement is not logged, java provides method taking a ''Supplier<String>'' as argument and that method should be used for all logging statements

    LOGGER.info(() -> "[Component:Action] param1=" + myParam1 + ", param2=" + myParam2);

=== Choose the appropriate log level ===

The available log levels for JUL are SEVERE, WARNING, INFO, CONFIG, FINE, FINER, FINEST. The default level when not specified is INFO.

* As a rule of thumb, enabling all INFO level statements should have a near zero impact on the execution, so log parameters that require some computations, or methods that are called very often should not be logged at INFO level.
* CONFIG level should provide more detailed information than the INFO level, but still not impact the execution too much. It should be possible for a component to use up to CONFIG level statements and make meaningful analyses using the timestamps of the events.
* FINE, FINER and FINEST are for statements that will not be used with the timestamps. Enabling them may have a visible effect on the performance of Trace Compass. They will typically be used with a purpose in mind, like debugging a component or getting data on caches for examples.

=== Log message format ===

JUL logging will produce trace data and unless one wants to visually parse a trace one event at a time, it will typically be used with an analysis to produce a result. To do so, the log messages should have a format that can then be associated with a trace type.

Third party plugins provide a custom trace parser and LTTng trace type for JUL statements that use the following format

    [EventName:MayContainSemiColon] paramName1=paramValue1, paramName2=paramValue2

=== Logging to populate Callstacks and Callgraph analyses ===

In order to log data in a way that the call stack analysis has enough information to display, use the TraceCompassLogUtils#ScopeLog. It is an auto-closable logger that will log a try-with-resources block of code.

        try (TraceCompassLogUtils.ScopeLog linksLogger = new TraceCompassLogUtils.ScopeLog(LOGGER, Level.CONFIG, "Perform Query")) { //$NON-NLS-1$
           // Do something
           new Object();
       }

The resulting trace will have the following fields

       INFO: {"ts":12345,"ph":"B",tid:1,"name:Perform Query"}
       INFO: {"ts":"12366,"ph":"E","tid":1}

=== Logging to track Object life cycles ===

In order to log data so that a lifecycle of a given object can be followed, use TraceCompassLogUtils#traceObjectCreation and TraceCompassLogUtils#traceObjectDestruction. The objects life cycles will be tracked and displayed.

=== Logging to track Asynchronous operations ===

In order to log data so that a lifecycle of a given object can be followed, use TraceCompassLogUtils#traceObjectCreation and TraceCompassLogUtils#traceAsyncStart/Nested/End. These create nestable sequences to follow.

== Analyzing Trace Compass Logs ==

Trace Compass can be traced by doing the following in the launch configuration:

* (java 8 only) -vmargs
* -Djava.util.logging.config.file=%gitroot%/logging.properties (where %gitroot% is the directory tracecompass is checked out to)
* -Dorg.eclipse.tracecompass.logging=true

Additionally the folder the trace is being written to (default is `home/.tracecompass/logs`) needs to be created in advance. After running Trace Compass, a `trace_n.json` will be created in the tracing folder. It needs to be converted to true json, so use the `jsonify.sh` script in the root directory to convert it. Then it can be loaded into Trace Compass, if the '''Trace Event format''' is installed from the incubator, or from a web browser such as Chromium.

The performance impact is low enough as long as the log level is greater than '''Level#FINEST'''.

NOTE: thread 1 is always the UI thread for Trace Compass. The thread numbers are the JVM threads and do not correspond necessarily to Process IDs. For more information, see the '''Flame Graph''' documentation in the user guide.

= XML schema extension =

Data-driven XML analyses add a lot of possibilities to enhance Trace Compass by developing one's own analyses and views without writing a single line of code. It is now possible for external plugins to extend the XSD schema to add their analysis extensions and parsers, while taking advantage of the Trace Compass XML analysis framework.

== Extending the schema ==

A plugin that want to add their own element to the XSD schema can do so by extending the ''extra'' element and defining a complex type extending the base type ''extraType''. Those additional elements are at the root level of the XSD, under the ''tmfxml'' element. The following example shows the XSD file for an additional ''callstack'' element:

    <?xml version="1.0" encoding="UTF-8" standalone="no"?>
    <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
        attributeFormDefault="unqualified" elementFormDefault="qualified">

        <xs:element name="callstack" substitutionGroup="extra" type="callstackType"/>

    <xs:complexType name="callstackType">
        <xs:complexContent>
            <xs:extension base="extraType">
               [... type definition ...]
            </xs:extension>
        </xs:complexContent>
    </xs:complexType>

    </xs:schema>

== Parsing the schema ==

To do something with this new schema element, one needs to be able to parse it. The parser must implement the ''ITmfXmlSchemaParser'' class. Since the schema extension are at the XML analysis level, the expected behavior is to define new analysis types. So the returned values of the parser are module helpers.

The following code snippet shows an example of analysis helper created from the ''callstack'' analysis defined above.

    public class CallstackXmlSchemaParser implements ITmfXmlSchemaParser {

        @Override
        public Collection<? extends IAnalysisModuleHelper> getModuleHelpers(File xmlFile, Document doc) {
            List<IAnalysisModuleHelper> list = new ArrayList<>();
            NodeList callstackNodes = doc.getElementsByTagName(CallstackXmlStrings.CALLSTACK);
            for (int i = 0; i < callstackNodes.getLength(); i++) {
                Element node = NonNullUtils.checkNotNull((Element) callstackNodes.item(i));

                IAnalysisModuleHelper helper = new CallstackXmlModuleHelper(xmlFile, node);
                list.add(helper);
            }
            return list;
        }
    }

The ''CallstackXmlModuleHelper'' created by the parser extends the ''TmfAnalysisModuleHelperXml'' class and overrides the ''TmfAnalysisModuleHelperXml#createOtherModule'' method. The following code shows an example of this.

    public class CallstackXmlModuleHelper extends TmfAnalysisModuleHelperXml {

        /**
         * Constructor
         *
         * @param xmlFile
         *            The XML file this element comes from
         * @param node
         *            The XML element for this callstack
         */
        public CallstackXmlModuleHelper(File xmlFile, Element node) {
            super(xmlFile, node, XmlAnalysisModuleType.OTHER);
            // Specific code
        }

        @Override
        protected IAnalysisModule createOtherModule(@NonNull String analysisid, @NonNull String name) {
            IAnalysisModule module = new CallstackXmlAnalysis(...);
            module.setId(analysisid);
            module.setName(name);
            return module;
        }
    }

== Adding the extension point ==

To advertise this schema extension and parser, an '''org.eclipse.tracecompass.tmf.analysis.xml.core.xsd''' extension must be specified for the plugin.

    <extension
            point="org.eclipse.tracecompass.tmf.analysis.xml.core.xsd">
        <xsdfile
            file="xsd_files/xmlCallstack.xsd">
        </xsdfile>
        <schemaParser
             class="my.package.CallstackXmlSchemaParser">
        </schemaParser>
    </extension>

= OS Execution Graph Extension =

The execution graph is an analysis of some ''worker'' status and the relations between them. A ''worker'' is any object in the model acting during the execution. For a typicaly operating system analysis, the workers are the threads.

The Linux Kernel Plugin provides a base execution graph, obtained by kernel events and tracking the running state of processes, who/what wakes who, network traffic and communication between threads, etc. But that analysis may not contain all the possible relations between threads or may miss some information that are only available in userspace. For example, traces in a virtual machines experiment may contain additional events to get the relation between the machines. And spin locks are a kind of lock that blocks a thread but are not visible from the kernel only.

The operating system execution graph can thus be extended by plugin who have additional information to add to the graph.

== Write the graph extension ==

To extend the execution graph, the plugin must first add the '''org.eclipse.tracecompass.analysis.os.linux.core''' plugin to its dependencies. Then one needs to write a class that extends the '''AbstracTraceEventHandler''' and another small one, possibly inline, implementing '''IOsExecutionGraphHandlerBuilder''', to build the handler.

The '''handleEvent''' method is the one to override in the event handler. The following code snippet show an example class to extend the graph:

    public class PThreadLockGraphHandler extends AbstractTraceEventHandler {

        /**
         * Constructor
         *
         * @param provider
         *            The graph provider
         * @param priority
         *            The priority of this handler
         */
        public PThreadLockGraphHandler(OsExecutionGraphProvider provider, int priority) {
            super(priority);
            fProvider = provider;
            fLastRequest = HashBasedTable.create();
        }

        /**
         * The handler builder for the event context handler
         */
        public static class HandlerBuilderPThreadLock implements IOsExecutionGraphHandlerBuilder {

            @Override
            public ITraceEventHandler createHandler(@NonNull OsExecutionGraphProvider provider, int priority) {
                return new PThreadLockGraphHandler(provider, priority);
            }
        }

        private OsWorker getOrCreateKernelWorker(ITmfEvent event, Integer tid) {
            HostThread ht = new HostThread(event.getTrace().getHostId(), tid);
            OsWorker worker = fProvider.getSystem().findWorker(ht);
            if (worker != null) {
                return worker;
            }
            worker = new OsWorker(ht, "kernel/" + tid, event.getTimestamp().getValue()); //$NON-NLS-1$
            worker.setStatus(ProcessStatus.RUN);
            fProvider.getSystem().addWorker(worker);
            return worker;
        }

        @Override
        public void handleEvent(ITmfEvent event) {
            String name = event.getName();
            if ("myevent".equals(name)) {
                // Get the TID and corresponding worker
                Integer tid = TmfTraceUtils.resolveIntEventAspectOfClassForEvent(event.getTrace(), LinuxTidAspect.class, event);
                if (tid == null) {
                    return;
                }
                OsWorker worker = getOrCreateKernelWorker(event, tid);
                // Get the graph to update
                TmfGraph graph = fProvider.getAssignedGraph();
                // Create a new vertex at the time of the event to add to the graph
                TmfVertex vertex = new TmfVertex(event.getTimestamp().toNanos());
                // The following code shows different possibilities for the graph
                // Append the vertex to the worker and create an horizontal edge of a specific type
                graph.append(worker, vertex, EdgeType.BLOCKED);
                // To create a relation between 2 workers, one needs another vertex
                // TmfVertex otherVertex = getOriginVertexForThisEvent([...]);
                // otherVertex.linkVertical(vertex);
            }
        }
    }

This class typically has all the logic it needs to retrieve information on the relations between threads. It will create vertices at any location of interest for a worker. Those vertices can be appended to the graph. The class may keep this vertex for future use in a link when the worker that acts in response to this action arrives.

Note that since many classes may add vertices to the graph, it is recommended to only append vertices at the current timestamp, as otherwise, it may add vertices at times earlier than the last vertex.

== Adding the extension point ==

To advertise this extension to the execution graph, the following extension should be added in the plugin:

    <extension
         point="org.eclipse.tracecompass.analysis.os.linux.core.graph.handler">
        <handler
           class="org.eclipse.tracecompass.incubator.internal.lttng2.ust.extras.core.pthread.PThreadLockGraphHandler$HandlerBuilderPThreadLock"
            priority="10">
        </handler>
    </extension>

The ''class'' attribute links to the handler builder class and the ''priority'' attribute indicates at which priority the handler will be registered. A handler with a lower priority will be executed before a handler with a higher one. The default priority is 10 and this is the priority at which the kernel graph itself is built.

= Data Providers =

Starting in Trace Compass 3.3, the core and UI are being decoupled with the data provider interface. This interface aims to provide a standard data model for different types of views.

Data providers are queried with a filter object, which usually contains a time range as well as other parameters required to correctly filter and sample the returned data. They also take an optional progress monitor to cancel the task. The returned models are encapsulated in a '''TmfModelResponse''' object, which is generic (to the response's type) and also encapsulates the Status of the reponse:

* CANCELLED if the query was cancelled by the progress monitor
* FAILED if an error occurred inside the data provider
* RUNNING if the response was returned before the underlying analysis was completed, and querying the provider again with the same parameters can return a different model.
* COMPLETED if the underlying analysis is finished and we do not expect a different response for the query parameters.

''Note that a complete example of analysis, data provider and views can be found in the [https://git.eclipse.org/c/tracecompass/org.eclipse.tracecompass.git/tree/doc/org.eclipse.tracecompass.examples org.eclipse.tracecompass.examples plugin sources].''

== Data provider types ==

The base data provider returns a tree, as a list of '''TmfTreeDataModel''', with a name, ID and parent ID. The ID is unique to a provider type and the parent ID indicates which element from the list is the entry's parent to rebuild the tree hierarchy from the list of models.

The base '''TimeGraphEntryModel''' class extends this with a start time and end time. Concrete classes are free to add other fields, as long as the model is serializable.

=== XY ===

The XY data provider type is used to associate an XY series to an entry from the tree. The data provider is queried with a filter that also contains a Collection of the IDs of the entries for which we want XY series. The response contains a map of the series for the desired IDs.

Each XY series can have its own x axis ('''ISeriesModel''' / '''SeriesModel''' - encapsulated in an '''ITmfXyModel''' / '''TmfXyModel''') or they can be shared by all models ('''IYModel''' / '''YModel''' encapsulated in an '''ITmfCommonXAxisModel''' / '''TmfCommonXAxisModel'''). The X axis is an array of longs, which makes it useful for a time axis or time buckets, but it can be used for any XY content.

The interface to implement is '''ITmfTreeXYDataProvider'''.

Here is a simple example of XY data provider, retrieving data from a simple state system displaying the child attributes of the root attributes.

<pre>
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.concurrent.atomic.AtomicLong;

import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.jdt.annotation.NonNullByDefault;
import org.eclipse.jdt.annotation.Nullable;
import org.eclipse.tracecompass.examples.core.analysis.ExampleStateSystemAnalysisModule;
import org.eclipse.tracecompass.internal.tmf.core.model.tree.AbstractTreeDataProvider;
import org.eclipse.tracecompass.statesystem.core.ITmfStateSystem;
import org.eclipse.tracecompass.statesystem.core.exceptions.StateSystemDisposedException;
import org.eclipse.tracecompass.statesystem.core.exceptions.TimeRangeException;
import org.eclipse.tracecompass.statesystem.core.interval.ITmfStateInterval;
import org.eclipse.tracecompass.tmf.core.dataprovider.DataProviderParameterUtils;
import org.eclipse.tracecompass.tmf.core.model.CommonStatusMessage;
import org.eclipse.tracecompass.tmf.core.model.TmfCommonXAxisModel;
import org.eclipse.tracecompass.tmf.core.model.YModel;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataModel;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataProvider;
import org.eclipse.tracecompass.tmf.core.model.tree.TmfTreeDataModel;
import org.eclipse.tracecompass.tmf.core.model.tree.TmfTreeModel;
import org.eclipse.tracecompass.tmf.core.model.xy.ITmfTreeXYDataProvider;
import org.eclipse.tracecompass.tmf.core.model.xy.ITmfXyModel;
import org.eclipse.tracecompass.tmf.core.model.xy.IYModel;
import org.eclipse.tracecompass.tmf.core.response.ITmfResponse;
import org.eclipse.tracecompass.tmf.core.response.ITmfResponse.Status;
import org.eclipse.tracecompass.tmf.core.response.TmfModelResponse;
import org.eclipse.tracecompass.tmf.core.trace.ITmfTrace;
import org.eclipse.tracecompass.tmf.core.trace.TmfTraceUtils;

import com.google.common.collect.BiMap;
import com.google.common.collect.HashBiMap;

/**
 * An example of an XY data provider.
 *
 * @author Geneviève Bastien
 */
@SuppressWarnings("restriction")
@NonNullByDefault
public class ExampleXYDataProvider extends AbstractTreeDataProvider<ExampleStateSystemAnalysisModule, TmfTreeDataModel> implements ITmfTreeXYDataProvider<TmfTreeDataModel> {

    /**
     * Provider unique ID.
     */
    public static final String ID = "org.eclipse.tracecompass.examples.xy.dataprovider"; //$NON-NLS-1$
    private static final AtomicLong sfAtomicId = new AtomicLong();

    private final BiMap<Long, Integer> fIDToDisplayQuark = HashBiMap.create();

    /**
     * Constructor
     *
     * @param trace
     *            The trace this data provider is for
     * @param analysisModule
     *            The analysis module
     */
    public ExampleXYDataProvider(ITmfTrace trace, ExampleStateSystemAnalysisModule analysisModule) {
        super(trace, analysisModule);
    }

    /**
     * Create the time graph data provider
     *
     * @param trace
     *            The trace for which is the data provider
     * @return The data provider
     */
    public static @Nullable ITmfTreeDataProvider<? extends ITmfTreeDataModel> create(ITmfTrace trace) {
        ExampleStateSystemAnalysisModule module = TmfTraceUtils.getAnalysisModuleOfClass(trace, ExampleStateSystemAnalysisModule.class, ExampleStateSystemAnalysisModule.ID);
        return module != null ? new ExampleXYDataProvider(trace, module) : null;
    }


    @Override
    public String getId() {
        return ID;
    }

    @Override
    protected boolean isCacheable() {
        return true;
    }

    @Override
    protected TmfTreeModel<TmfTreeDataModel> getTree(ITmfStateSystem ss, Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) throws StateSystemDisposedException {
        // Make an entry for each base quark
        List<TmfTreeDataModel> entryList = new ArrayList<>();
        for (Integer quark : ss.getQuarks("CPUs", "*")) { //$NON-NLS-1$ //$NON-NLS-2$
            int statusQuark = ss.optQuarkRelative(quark, "Status"); //$NON-NLS-1$
            if (statusQuark != ITmfStateSystem.INVALID_ATTRIBUTE) {
                Long id = fIDToDisplayQuark.inverse().computeIfAbsent(statusQuark, q -> sfAtomicId.getAndIncrement());
                entryList.add(new TmfTreeDataModel(id, -1, ss.getAttributeName(quark)));
            }
        }
        return new TmfTreeModel<>(Collections.emptyList(), entryList);
    }

    @Override
    public TmfModelResponse<ITmfXyModel> fetchXY(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        ITmfStateSystem ss = getAnalysisModule().getStateSystem();
        if (ss == null) {
            return new TmfModelResponse<>(null, ITmfResponse.Status.FAILED, CommonStatusMessage.ANALYSIS_INITIALIZATION_FAILED);
        }

        Map<Integer, double[]> quarkToValues = new HashMap<>();
        // Prepare the quarks to display
        Collection<Long> selectedItems = DataProviderParameterUtils.extractSelectedItems(fetchParameters);
        if (selectedItems == null) {
            // No selected items, take them all
            selectedItems = fIDToDisplayQuark.keySet();
        }
        List<Long> times = getTimes(ss, DataProviderParameterUtils.extractTimeRequested(fetchParameters));
        for (Long id : selectedItems) {
            Integer quark = fIDToDisplayQuark.get(id);
            if (quark != null) {
                quarkToValues.put(quark, new double[times.size()]);
            }
        }
        long[] nativeTimes = new long[times.size()];
        for (int i = 0; i < times.size(); i++) {
            nativeTimes[i] = times.get(i);
        }

        // Query the state system to fill the array of values
        try {
            for (ITmfStateInterval interval : ss.query2D(quarkToValues.keySet(), times)) {
                if (monitor != null && monitor.isCanceled()) {
                    return new TmfModelResponse<>(null, Status.CANCELLED, CommonStatusMessage.TASK_CANCELLED);
                }
                double[] row = quarkToValues.get(interval.getAttribute());
                Object value = interval.getValue();
                if (row != null && (value instanceof Number)) {
                    Double dblValue = ((Number) value).doubleValue();
                    for (int i = 0; i < times.size(); i++) {
                        Long time = times.get(i);
                        if (interval.getStartTime() <= time && interval.getEndTime() >= time) {
                            row[i] = dblValue;
                        }
                    }
                }
            }
        } catch (IndexOutOfBoundsException | TimeRangeException | StateSystemDisposedException e) {
            return new TmfModelResponse<>(null, Status.FAILED, CommonStatusMessage.STATE_SYSTEM_FAILED);
        }
        List<IYModel> models = new ArrayList<>();
        for (Entry<Integer, double[]> values : quarkToValues.entrySet()) {
            models.add(new YModel(fIDToDisplayQuark.inverse().getOrDefault(values.getKey(), -1L), values.getValue()));
        }

        return new TmfModelResponse<>(new TmfCommonXAxisModel("Example XY data provider", nativeTimes, models), Status.COMPLETED, CommonStatusMessage.COMPLETED); //$NON-NLS-1$
    }

    private static List<Long> getTimes(ITmfStateSystem key, @Nullable List<Long> list) {
        if (list == null) {
            return Collections.emptyList();
        }
        List<@NonNull Long> times = new ArrayList<>();
        for (long t : list) {
            if (key.getStartTime() <= t && t <= key.getCurrentEndTime()) {
                times.add(t);
            }
        }
        Collections.sort(times);
        return times;
    }

}
</pre>

=== Time Graph ===

The Time Graph data provider is used to associate states to tree entries, i.e. a sampled list of states, with a start time, duration, integer value and optional label. The time graph states ('''ITimeGraphState''' / '''TimeGraphState''') are encapsulated in an '''ITimeGraphRowModel''' which also provides the ID of the entry they map to.

The time graph data provider can also supply arrows to link entries one to another with a start time and start ID as well as a duration and target ID. The interface to implement is '''ITimeGraphArrow''', else '''TimeGraphArrow''' can be extended.

Additional information can be added to the states with tooltips, which are maps of tooltip entry names to tooltip entry values. The data provider may also suggest styles for the states by implementing the '''IOutputStyleProvider''' interface.

The interface to implement is '''ITimeGraphDataProvider'''.

Also, if the data provider wants to provide some styling information, for example, colors, height and opacity, etc, it can implement the '''IOutputStyleProvider''' interface who will add a method to fetch styles. The '''TimeGraphState''' objects can then be constructed with a style and the view will automatically use this style information.

Here is a simple example of a time graph data provider, retrieving data from a simple state system where each root attribute is to be displayed. It also provides simple styling.

<pre>
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.atomic.AtomicLong;
import java.util.function.Predicate;

import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.jdt.annotation.NonNullByDefault;
import org.eclipse.jdt.annotation.Nullable;
import org.eclipse.tracecompass.examples.core.analysis.ExampleStateSystemAnalysisModule;
import org.eclipse.tracecompass.internal.tmf.core.model.AbstractTmfTraceDataProvider;
import org.eclipse.tracecompass.statesystem.core.ITmfStateSystem;
import org.eclipse.tracecompass.statesystem.core.exceptions.StateSystemDisposedException;
import org.eclipse.tracecompass.statesystem.core.exceptions.TimeRangeException;
import org.eclipse.tracecompass.statesystem.core.interval.ITmfStateInterval;
import org.eclipse.tracecompass.tmf.core.dataprovider.DataProviderParameterUtils;
import org.eclipse.tracecompass.tmf.core.dataprovider.X11ColorUtils;
import org.eclipse.tracecompass.tmf.core.model.CommonStatusMessage;
import org.eclipse.tracecompass.tmf.core.model.IOutputStyleProvider;
import org.eclipse.tracecompass.tmf.core.model.OutputElementStyle;
import org.eclipse.tracecompass.tmf.core.model.OutputStyleModel;
import org.eclipse.tracecompass.tmf.core.model.StyleProperties;
import org.eclipse.tracecompass.tmf.core.model.timegraph.ITimeGraphArrow;
import org.eclipse.tracecompass.tmf.core.model.timegraph.ITimeGraphDataProvider;
import org.eclipse.tracecompass.tmf.core.model.timegraph.ITimeGraphEntryModel;
import org.eclipse.tracecompass.tmf.core.model.timegraph.ITimeGraphRowModel;
import org.eclipse.tracecompass.tmf.core.model.timegraph.ITimeGraphState;
import org.eclipse.tracecompass.tmf.core.model.timegraph.TimeGraphEntryModel;
import org.eclipse.tracecompass.tmf.core.model.timegraph.TimeGraphModel;
import org.eclipse.tracecompass.tmf.core.model.timegraph.TimeGraphRowModel;
import org.eclipse.tracecompass.tmf.core.model.timegraph.TimeGraphState;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataModel;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataProvider;
import org.eclipse.tracecompass.tmf.core.model.tree.TmfTreeModel;
import org.eclipse.tracecompass.tmf.core.response.ITmfResponse;
import org.eclipse.tracecompass.tmf.core.response.ITmfResponse.Status;
import org.eclipse.tracecompass.tmf.core.response.TmfModelResponse;
import org.eclipse.tracecompass.tmf.core.trace.ITmfTrace;
import org.eclipse.tracecompass.tmf.core.trace.TmfTraceUtils;

import com.google.common.collect.BiMap;
import com.google.common.collect.HashBiMap;
import com.google.common.collect.ImmutableMap;
import com.google.common.collect.Multimap;

/**
 * An example of a time graph data provider.
 *
 * @author Geneviève Bastien
 */
@SuppressWarnings("restriction")
@NonNullByDefault
public class ExampleTimeGraphDataProvider extends AbstractTmfTraceDataProvider implements ITimeGraphDataProvider<@NonNull ITimeGraphEntryModel>, IOutputStyleProvider {

    /**
     * Provider unique ID.
     */
    public static final String ID = "org.eclipse.tracecompass.examples.timegraph.dataprovider"; //$NON-NLS-1$
    private static final AtomicLong sfAtomicId = new AtomicLong();
    private static final String STYLE0_NAME = "style0"; //$NON-NLS-1$
    private static final String STYLE1_NAME = "style1"; //$NON-NLS-1$
    private static final String STYLE2_NAME = "style2"; //$NON-NLS-1$

    /* The map of basic styles */
    private static final Map<String, OutputElementStyle> STATE_MAP;
    /*
     * A map of styles names to a style that has the basic style as parent, to
     * avoid returning complete styles for each state
     */
    private static final Map<String, OutputElementStyle> STYLE_MAP;

    static {
        /* Build three different styles to use as examples */
        ImmutableMap.Builder<String, OutputElementStyle> builder = new ImmutableMap.Builder<>();

        builder.put(STYLE0_NAME, new OutputElementStyle(null, ImmutableMap.of(StyleProperties.STYLE_NAME, STYLE0_NAME,
                StyleProperties.BACKGROUND_COLOR, String.valueOf(X11ColorUtils.toHexColor("blue")), //$NON-NLS-1$
                StyleProperties.HEIGHT, 0.5f,
                StyleProperties.OPACITY, 0.75f)));
        builder.put(STYLE1_NAME, new OutputElementStyle(null, ImmutableMap.of(StyleProperties.STYLE_NAME, STYLE1_NAME,
                StyleProperties.BACKGROUND_COLOR, String.valueOf(X11ColorUtils.toHexColor("yellow")), //$NON-NLS-1$
                StyleProperties.HEIGHT, 1.0f,
                StyleProperties.OPACITY, 1.0f)));
        builder.put(STYLE2_NAME, new OutputElementStyle(null, ImmutableMap.of(StyleProperties.STYLE_NAME, STYLE2_NAME,
                StyleProperties.BACKGROUND_COLOR, String.valueOf(X11ColorUtils.toHexColor("green")), //$NON-NLS-1$
                StyleProperties.HEIGHT, 0.75f,
                StyleProperties.OPACITY, 0.5f)));
        STATE_MAP = builder.build();

        /* build the style map too */
        builder = new ImmutableMap.Builder<>();
        builder.put(STYLE0_NAME, new OutputElementStyle(STYLE0_NAME));
        builder.put(STYLE1_NAME, new OutputElementStyle(STYLE1_NAME));
        builder.put(STYLE2_NAME, new OutputElementStyle(STYLE2_NAME));
        STYLE_MAP = builder.build();
    }

    private final BiMap<Long, Integer> fIDToDisplayQuark = HashBiMap.create();
    private ExampleStateSystemAnalysisModule fModule;

    /**
     * Constructor
     *
     * @param trace
     *            The trace this analysis is for
     * @param module
     *            The scripted analysis for this data provider
     */
    public ExampleTimeGraphDataProvider(ITmfTrace trace, ExampleStateSystemAnalysisModule module) {
        super(trace);
        fModule = module;
    }

    /**
     * Create the time graph data provider
     *
     * @param trace
     *            The trace for which is the data provider
     * @return The data provider
     */
    public static @Nullable ITmfTreeDataProvider<? extends ITmfTreeDataModel> create(ITmfTrace trace) {
        ExampleStateSystemAnalysisModule module = TmfTraceUtils.getAnalysisModuleOfClass(trace, ExampleStateSystemAnalysisModule.class, ExampleStateSystemAnalysisModule.ID);
        return module != null ? new ExampleTimeGraphDataProvider(trace, module) : null;
    }

    @Override
    public TmfModelResponse<TmfTreeModel<@NonNull ITimeGraphEntryModel>> fetchTree(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        fModule.waitForInitialization();
        ITmfStateSystem ss = fModule.getStateSystem();
        if (ss == null) {
            return new TmfModelResponse<>(null, ITmfResponse.Status.FAILED, CommonStatusMessage.ANALYSIS_INITIALIZATION_FAILED);
        }

        boolean isComplete = ss.waitUntilBuilt(0);
        long endTime = ss.getCurrentEndTime();

        // Make an entry for each base quark
        List<ITimeGraphEntryModel> entryList = new ArrayList<>();
        for (Integer quark : ss.getQuarks("CPUs", "*")) { //$NON-NLS-1$ //$NON-NLS-2$
            Long id = fIDToDisplayQuark.inverse().computeIfAbsent(quark, q -> sfAtomicId.getAndIncrement());
            entryList.add(new TimeGraphEntryModel(id, -1, ss.getAttributeName(quark), ss.getStartTime(), endTime));
        }

        Status status = isComplete ? Status.COMPLETED : Status.RUNNING;
        String msg = isComplete ? CommonStatusMessage.COMPLETED : CommonStatusMessage.RUNNING;
        return new TmfModelResponse<>(new TmfTreeModel<>(Collections.emptyList(), entryList), status, msg);
    }

    @Override
    public @NonNull String getId() {
        return ID;
    }

    @Override
    public @NonNull TmfModelResponse<TimeGraphModel> fetchRowModel(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        ITmfStateSystem ss = fModule.getStateSystem();
        if (ss == null) {
            return new TmfModelResponse<>(null, ITmfResponse.Status.FAILED, CommonStatusMessage.ANALYSIS_INITIALIZATION_FAILED);
        }

        try {
            List<@NonNull ITimeGraphRowModel> rowModels = getDefaultRowModels(fetchParameters, ss, monitor);
            if (rowModels == null) {
                rowModels = Collections.emptyList();
            }
            return new TmfModelResponse<>(new TimeGraphModel(rowModels), Status.COMPLETED, CommonStatusMessage.COMPLETED);
        } catch (IndexOutOfBoundsException | TimeRangeException | StateSystemDisposedException e) {
            return new TmfModelResponse<>(null, Status.FAILED, CommonStatusMessage.STATE_SYSTEM_FAILED);
        }
    }

    private @Nullable List<ITimeGraphRowModel> getDefaultRowModels(Map<String, Object> fetchParameters, ITmfStateSystem ss, @Nullable IProgressMonitor monitor) throws IndexOutOfBoundsException, TimeRangeException, StateSystemDisposedException {
        Map<Integer, ITimeGraphRowModel> quarkToRow = new HashMap<>();
        // Prepare the quarks to display
        Collection<Long> selectedItems = DataProviderParameterUtils.extractSelectedItems(fetchParameters);
        if (selectedItems == null) {
            // No selected items, take them all
            selectedItems = fIDToDisplayQuark.keySet();
        }
        for (Long id : selectedItems) {
            Integer quark = fIDToDisplayQuark.get(id);
            if (quark != null) {
                quarkToRow.put(quark, new TimeGraphRowModel(id, new ArrayList<>()));
            }
        }

        // This regex map automatically filters or highlights the entry
        // according to the global filter entered by the user
        Map<@NonNull Integer, @NonNull Predicate<@NonNull Multimap<@NonNull String, @NonNull Object>>> predicates = new HashMap<>();
        Multimap<@NonNull Integer, @NonNull String> regexesMap = DataProviderParameterUtils.extractRegexFilter(fetchParameters);
        if (regexesMap != null) {
            predicates.putAll(computeRegexPredicate(regexesMap));
        }

        // Query the state system to fill the states
        long currentEndTime = ss.getCurrentEndTime();
        for (ITmfStateInterval interval : ss.query2D(quarkToRow.keySet(), getTimes(ss, DataProviderParameterUtils.extractTimeRequested(fetchParameters)))) {
            if (monitor != null && monitor.isCanceled()) {
                return Collections.emptyList();
            }
            ITimeGraphRowModel row = quarkToRow.get(interval.getAttribute());
            if (row != null) {
                List<@NonNull ITimeGraphState> states = row.getStates();
                ITimeGraphState timeGraphState = getStateFromInterval(interval, currentEndTime);
                // This call will compare the state with the filter predicate
                applyFilterAndAddState(states, timeGraphState, row.getEntryID(), predicates, monitor);
            }
        }
        for (ITimeGraphRowModel model : quarkToRow.values()) {
            model.getStates().sort(Comparator.comparingLong(ITimeGraphState::getStartTime));
        }

        return new ArrayList<>(quarkToRow.values());
    }

    private static TimeGraphState getStateFromInterval(ITmfStateInterval statusInterval, long currentEndTime) {
        long time = statusInterval.getStartTime();
        long duration = Math.min(currentEndTime, statusInterval.getEndTime() + 1) - time;
        Object o = statusInterval.getValue();
        if (!(o instanceof Long)) {
            // Add a null state
            return new TimeGraphState(time, duration, Integer.MIN_VALUE);
        }
        String styleName = "style" + ((Long) o) % 3; //$NON-NLS-1$
        return new TimeGraphState(time, duration, String.valueOf(o), STYLE_MAP.get(styleName));
    }

    private static Set<Long> getTimes(ITmfStateSystem key, @Nullable List<Long> list) {
        if (list == null) {
            return Collections.emptySet();
        }
        Set<@NonNull Long> times = new HashSet<>();
        for (long t : list) {
            if (key.getStartTime() <= t && t <= key.getCurrentEndTime()) {
                times.add(t);
            }
        }
        return times;
    }

    @Override
    public @NonNull TmfModelResponse<List<ITimeGraphArrow>> fetchArrows(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        /**
         * If there were arrows to be drawn, this is where they would be defined
         */
        return new TmfModelResponse<>(null, Status.COMPLETED, CommonStatusMessage.COMPLETED);
    }

    @Override
    public @NonNull TmfModelResponse<Map<String, String>> fetchTooltip(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        /**
         * If there were tooltips to be drawn, this is where they would be
         * defined
         */
        return new TmfModelResponse<>(null, Status.COMPLETED, CommonStatusMessage.COMPLETED);
    }

    @Override
    public TmfModelResponse<OutputStyleModel> fetchStyle(Map<String, Object> fetchParameters, @Nullable IProgressMonitor monitor) {
        return new TmfModelResponse<>(new OutputStyleModel(STATE_MAP), Status.COMPLETED, CommonStatusMessage.COMPLETED);
    }

}
</pre>

== Data provider management ==

Data providers can be handled by the '''DataProviderManager''' class, which uses an extension point and factories for data providers.

This manager associates a unique data provider per trace and extension point ID, ensuring that data providers can be reused and that each entry for a trace reuses the same unique entry ID.

=== Data Provider Factories ===

The data provider manager requires a factory for the various data providers, to create the data provider instances for a trace. Here is an example of factory class to create the time graph data provider of the previous section.

<pre>
import java.util.Collection;
import java.util.Collections;

import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.jdt.annotation.Nullable;
import org.eclipse.tracecompass.examples.core.analysis.ExampleStateSystemAnalysisModule;
import org.eclipse.tracecompass.internal.tmf.core.model.DataProviderDescriptor;
import org.eclipse.tracecompass.internal.tmf.core.model.xy.TmfTreeXYCompositeDataProvider;
import org.eclipse.tracecompass.tmf.core.dataprovider.IDataProviderDescriptor;
import org.eclipse.tracecompass.tmf.core.dataprovider.IDataProviderDescriptor.ProviderType;
import org.eclipse.tracecompass.tmf.core.dataprovider.IDataProviderFactory;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataModel;
import org.eclipse.tracecompass.tmf.core.model.tree.ITmfTreeDataProvider;
import org.eclipse.tracecompass.tmf.core.trace.ITmfTrace;
import org.eclipse.tracecompass.tmf.core.trace.TmfTraceManager;
import org.eclipse.tracecompass.tmf.core.trace.TmfTraceUtils;

/**
 * An example of a time graph data provider factory.
 *
 * This factory is also in the developer documentation of Trace Compass. If it is
 * modified here, the doc should also be updated.
 *
 * @author Geneviève Bastien
 */
@SuppressWarnings("restriction")
public class ExampleTimeGraphProviderFactory implements IDataProviderFactory {

    private static final IDataProviderDescriptor DESCRIPTOR = new DataProviderDescriptor.Builder()
            .setId(ExampleTimeGraphDataProvider.ID)
            .setName("Example time graph data provider") //$NON-NLS-1$
            .setDescription("This is an example of a time graph data provider using a state system analysis as a source of data") //$NON-NLS-1$
            .setProviderType(ProviderType.TIME_GRAPH)
            .build();

    @Override
    public @Nullable ITmfTreeDataProvider<? extends ITmfTreeDataModel> createProvider(ITmfTrace trace) {
        Collection<@NonNull ITmfTrace> traces = TmfTraceManager.getTraceSet(trace);
        if (traces.size() == 1) {
            return ExampleTimeGraphDataProvider.create(trace);
        }
        return TmfTreeXYCompositeDataProvider.create(traces, "Example time graph data provider", ExampleTimeGraphDataProvider.ID); //$NON-NLS-1$
    }

    @Override
    public Collection<IDataProviderDescriptor> getDescriptors(@NonNull ITmfTrace trace) {
        ExampleStateSystemAnalysisModule module = TmfTraceUtils.getAnalysisModuleOfClass(trace, ExampleStateSystemAnalysisModule.class, ExampleStateSystemAnalysisModule.ID);
        return module != null ? Collections.singletonList(DESCRIPTOR) : Collections.emptyList();
    }

}
</pre>

=== Extension point ===
This extension needs to be added to the plugin's plugin.xml file:
<pre>
<extension point="org.eclipse.tracecompass.tmf.core.dataprovider">
    <dataProviderFactory
         class="org.eclipse.tracecompass.examples.core.data.provider.ExampleTimeGraphProviderFactory"
         id="org.eclipse.tracecompass.examples.timegraph.dataprovider">
    </dataProviderFactory>
    <dataProviderFactory
         class="org.eclipse.tracecompass.examples.core.data.provider.ExampleXYDataProviderFactory"
         id="org.eclipse.tracecompass.examples.xy.dataprovider">
    </dataProviderFactory>
</extension>
</pre>

=== Experiments ===

In the data provider manager, experiments also get a unique instance of a data provider, which can be specific or encapsulate the data providers from the child traces. For example, an experiment can have its own concrete data provider when required (an analysis that runs only on experiments), or the factory would create a '''CompositeDataProvider''' (using '''TmfTreeXYCompositeDataProvider''' or '''TmfTimeGraphCompositeDataProvider''') encapsulating the providers from its traces. The benefit of encapsulating the providers from child traces is that their entries/IDs can be reused, limiting the number of created objects and ensuring consistency in views. These composite data providers dispatch the request to all the encapsulated providers and aggregates the results into the expected data structure.

== Utilities ==

Abstract base classes are provided for TreeXY and time graph data providers based on '''TmfStateSystemAnalysisModule'''s ('''AbstractTreeCommonXDataProvider''' and '''AbstractTimeGraphDataProvider''', respectively). They handle concurrency, mapping of state system attributes to unique IDs, exceptions, caching and encapsulating the model in a response with the correct status.

== Views ==

Data providers are used to populate views. When the data provider is well implemented and if the view does not require any additional behavior, it should be straightforward to implement.

=== XY views ===

XY data providers can be visualized with a view extending '''TmfChartView'''. Here's an example of the minimal implementation required to display its data.

The tree viewer (left part) can be an extension of the '''AbstractSelectTreeViewer''' class, while the chart part, showing the XY chart itself can extend '''AbstractSelectTreeViewer'''.

Out of the box, it supports experiments, updating during the trace analysis, Pin & Clone and a number of chart viewer features.

<pre>
import java.util.Comparator;
import java.util.Objects;

import org.eclipse.jdt.annotation.NonNull;
import org.eclipse.jdt.annotation.Nullable;
import org.eclipse.swt.widgets.Composite;
import org.eclipse.tracecompass.examples.core.data.provider.ExampleXYDataProvider;
import org.eclipse.tracecompass.tmf.ui.viewers.TmfViewer;
import org.eclipse.tracecompass.tmf.ui.viewers.tree.AbstractSelectTreeViewer;
import org.eclipse.tracecompass.tmf.ui.viewers.tree.ITmfTreeColumnDataProvider;
import org.eclipse.tracecompass.tmf.ui.viewers.tree.TmfTreeColumnData;
import org.eclipse.tracecompass.tmf.ui.viewers.tree.TmfTreeViewerEntry;
import org.eclipse.tracecompass.tmf.ui.viewers.xycharts.TmfXYChartViewer;
import org.eclipse.tracecompass.tmf.ui.viewers.xycharts.linecharts.TmfFilteredXYChartViewer;
import org.eclipse.tracecompass.tmf.ui.viewers.xycharts.linecharts.TmfXYChartSettings;
import org.eclipse.tracecompass.tmf.ui.views.TmfChartView;

import com.google.common.collect.ImmutableList;

/**
 * An example of a data provider XY view
 *
 * @author Geneviève Bastien
 */
public class ExampleXYDataProviderView extends TmfChartView {

    /** View ID. */
    public static final String ID = "org.eclipse.tracecompass.examples.dataprovider.xyview"; //$NON-NLS-1$

    /**
     * Constructor
     */
    public ExampleXYDataProviderView() {
        super("Example Tree XY View"); //$NON-NLS-1$
    }

    @Override
    protected TmfXYChartViewer createChartViewer(@Nullable Composite parent) {
        TmfXYChartSettings settings = new TmfXYChartSettings(null, null, null, 1);
        return new TmfFilteredXYChartViewer(parent, settings, ExampleXYDataProvider.ID);
    }

    private static final class TreeXyViewer extends AbstractSelectTreeViewer {

        public TreeXyViewer(Composite parent) {
            super(parent, 1, ExampleXYDataProvider.ID);
        }

        @Override
        protected ITmfTreeColumnDataProvider getColumnDataProvider() {
            return () -> ImmutableList.of(createColumn("Name", Comparator.comparing(TmfTreeViewerEntry::getName)), //$NON-NLS-1$
                    new TmfTreeColumnData("Legend")); //$NON-NLS-1$
        }
    }

    @Override
    protected @NonNull TmfViewer createLeftChildViewer(@Nullable Composite parent) {
        return new TreeXyViewer(Objects.requireNonNull(parent));
    }
}
</pre>

=== Time Graph Views ===

For time graph view populated by a data provider, the base class to extend would be the '''BaseDataProviderTimeGraphView'''. The default implementation is fairly straightforward and if the the data provider also provides styling through the '''IOutputStyleProvider''', an instance of the '''BaseDataProviderTimeGraphPresentationProvider''' can be used directly. 

If there is no styling though, all states would be drawn as black states. In that case, a presentation provider will need to be added to the view. It can extend '''TimeGraphPresentationProvider'''.

Here is the simplest implementation of the time graph view using a data provider:

<pre>
import org.eclipse.tracecompass.examples.core.data.provider.ExampleTimeGraphDataProvider;
import org.eclipse.tracecompass.internal.provisional.tmf.ui.widgets.timegraph.BaseDataProviderTimeGraphPresentationProvider;
import org.eclipse.tracecompass.tmf.ui.views.timegraph.BaseDataProviderTimeGraphView;

/**
 * An example of a data provider time graph view
 *
 * @author Geneviève Bastien
 */
@SuppressWarnings("restriction")
public class ExampleTimeGraphDataProviderView extends BaseDataProviderTimeGraphView {

    /** View ID. */
    public static final String ID = "org.eclipse.tracecompass.examples.dataprovider.tgview"; //$NON-NLS-1$

    /**
     * Default constructor
     */
    public ExampleTimeGraphDataProviderView() {
       super(ID, new BaseDataProviderTimeGraphPresentationProvider(), ExampleTimeGraphDataProvider.ID);
    }

}
</pre>