@HD	VN:1.4	SO:coordinate
@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
@CO	The MIT License
@CO	
@CO	Copyright (c) 2014 Genome Research Ltd.
@CO	
@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
@CO	of this software and associated documentation files (the "Software"), to deal
@CO	in the Software without restriction, including without limitation the rights
@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
@CO	copies of the Software, and to permit persons to whom the Software is
@CO	furnished to do so, subject to the following conditions:
@CO	
@CO	The above copyright notice and this permission notice shall be included in
@CO	all copies or substantial portions of the Software.
@CO	
@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
@CO	THE SOFTWARE.
@CO	
@CO	Test file for the -B option. Only very basic tests here.  The full
@CO	B operator semantics are currently not well defined so it's not
@CO	possible to say what should happen in certain cases.
@CO	For a long discussion of B operators, see
@CO	https://sourceforge.net/p/samtools/mailman/message/28463294/
@CO	 
@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
ref1_grp1_p001	0	ref1	1	0	15M	=	25	34	CGAGCACGGTACCCG	AAAAA"BBBBBBBBB	RG:Z:grp1
ref1_grp1_p002	0	ref1	1	0	15M	=	25	34	CGAGCTCGGTACCCG	BBBBB"BBBBAAAAA	RG:Z:grp1
ref1_grp1_p003	0	ref1	1	0	15M	=	25	34	CGAGCACGGTACCCG	000002AAAAAAAAA	RG:Z:grp1
ref1_grp1_p004	0	ref1	1	0	15M	=	25	34	CGAGCTCGGTACCCG	AAAAA2AAAA00000	RG:Z:grp1
ref1_grp1_p005	4	ref1	2	0	1M2B1M	=	25	34	GC	AA	RG:Z:grp1
ref1_grp1_p006	0	ref1	2	0	1M1I1M	=	25	34	GTA	0AA	RG:Z:grp1
ref1_grp1_p007	0	ref1	3	0	1M1D1M	=	25	34	AG	00	RG:Z:grp1
