@HD	VN:1.4	SO:queryname
@SQ	SN:ref1	LN:30
@CO	The MIT License
@CO	
@CO	Copyright (c) 2014 Genome Research Ltd.
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@CO	in the Software without restriction, including without limitation the rights
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@CO	
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@CO	
@CO	              1         2         3
@CO	     12345678901234567890123456789012345 Padded base numbering
@CO	Ref  GGGATCCTCTAGAGT*****CGACCTGCAGGCATG 15M 5D 15M
@CO	     123456789012345     678901234567890 Depadded base numbering
@CO	              1              2         3
@CO	Insert              ACGTA
@CO	
@CO	Read Padded Sequence                     Pad CIGAR  (Depadded CIGAR)
@CO	==== ===============                     =========  ================
@CO	r001 GGGATCCTCTAGAGT*****CGACCTGCAGGCATG 15M 5D 15M (30M)
@CO	r002 GGGATCCTCTAGAGTA***ACGACCTGCAGGCATG 16M 3D 16M (15M 1I 3P 1I 15M)
@CO	r003 GGGATCCTCTAGAGTAC*TACGACCTGCAGGCATG 17M 1D 17M (15M 2I 1P 2I 15M)
@CO	r004 GGGATCCTCTAGAGTACGTACGACCTGCAGGCATG 35M        (15M 5I 15M)
@CO	r005 GGGATCCTCTAGAGTA*G*ACGACCTGCAGGCATG 16M 1D 1M 1D 16M (15M 1I 1P 1I 1P 1I 15M)
@CO	r006 GGGATCCTCTAGAGT**G**CGACCTGCAGGCATG 15M 2D 1M 2D 15M (15M 2P 1I 2P 15M)
@CO	r007 GGGATCCTCTAGAGT*CGTACGACCTGCAGGCATG 15M 1D 19M (15M 1P 4I 15M)
@CO	r008 GGGATCCTCTAGAGT**GTACGACCTGCAGGCATG 15M 2D 18M (15M 2P 3I 15M)
@CO	r009 GGGATCCTCTAGAGT***TACGACCTGCAGGCATG 15M 3D 17M (15M 3P 2I 15M)
@CO	r010 GGGATCCTCTAGAGT****ACGACCTGCAGGCATG 15M 4D 16M (15M 4P 1I 15M)
@CO	r011 GGGATCCTCTAGAGTA****CGACCTGCAGGCATG 16M 4D 15M (15M 1I 4P 15M)
@CO	r012 GGGATCCTCTAGAGTAC***CGACCTGCAGGCATG 17M 3D 15M (15M 2I 3P 15M)
@CO	r013 GGGATCCTCTAGAGTACG**CGACCTGCAGGCATG 18M 2D 15M (15M 3I 2P 15M)
@CO	r014 GGGATCCTCTAGAGTACGT*CGACCTGCAGGCATG 19M 1D 15M (15M 4I 1P 15M)
@CO	r015      CCTCTAGAGT                     10M        (10M)
@CO	r016       CTCTAGAGTA                    10M        (9M 1I)
@CO	r017        TCTAGAGTAC                   10M        (8M 2I)
@CO	r018         CTAGAGTACG                  10M        (7M 3I)
@CO	r019          TAGAGTACGT                 10M        (6M 4I)
@CO	r020           AGAGTACGTA                10M        (5M 5I)
@CO	r021            GAGTACGTAC               10M        (4M 5I 1M)
@CO	r022             AGTACGTACG              10M        (3M 5I 2M)
@CO	r023              GTACGTACGA             10M        (2M 5I 3M)
@CO	r024               TACGTACGAC            10M        (1M 5I 4M)
@CO	r025                ACGTACGACC           10M        (5I 5M)
@CO	r026                *CGTACGACCT          10M        (1P 4I 6M)
@CO	r027                **GTACGACCTG         10M        (2P 3I 7M)
@CO	r028                ***TACGACCTGC        10M        (3P 2I 8M)
@CO	r029                ****ACGACCTGCA       10M        (4P 1I 9M)
@CO	r030                     CGACCTGCAG      10M        (10M)
@CO	r031       CTCTAGAGT*****C               9M 5D 1M   (10M)
@CO	r032        TCTAGAGT*****CG              8M 5D 2M   (10M)
@CO	r033         CTAGAGT*****CGA             7M 5D 3M   (10M)
@CO	r034          TAGAGT*****CGAC            6M 5D 4M   (10M)
@CO	r035           AGAGT*****CGACC           5M 5D 5M   (10M)
@CO	r036            GAGT*****CGACCT          4M 5D 6M   (10M)
@CO	r037             AGT*****CGACCTG         3M 5D 7M   (10M)
@CO	r038              GT*****CGACCTGC        2M 5D 8M   (10M)
@CO	r039               T*****CGACCTGCA       1M 5D 9M   (10M)
@CO	r040           AGAG******CGACC           4M 6D 5M   (4M 1D 5M)
@CO	r041           AGAGT******GACC           5M 6D 4M   (5M 1D 4M)
@CO	r042           AGAG*******GACC           4M 7D 4M   (4M 2D 4M)
@CO	r043           AGAG*****ACGACC           4M 5D 6M   (4M 1D 4P 1I 5M)
@CO	r044           AGAG*ACGTACGACC           4M 1D 10M  (4M 1D 5I 5M)
@CO	r045           AGAGTACGTA*GACC           10M 1D 4M  (5M 5I 1D 4M)
@CO	r046           AGAG*ACGTA*GACC           4M 1D 5M 1D 4M (4M 1D 5I 1D 4M)
@CO	r047           AGAG*A*G*A*GACC           4M 1D 1M 1D 1M 1D 1M 1D 4M (4M 1D 1I 1P 1I 1P 1I 1D 4M)
@CO	r048           AGAGTACGtacgacc            8M 7S       (5M 3I 7S)
@CO	r049           AGAGT*CGtacgacc            5M 1D 2M 7S (5M 1P 2I 7S)
@CO	r050           agagtacGTACGACC            7S 8M       (7S 2P 3I 5M)
@CO	r051           agagtac*TACGACC            7S 1D 7M    (7S 3P 2I 5M)
@CO	r052           agagtacGT*CGACC            7S 2M 1D 5M (7S 2P 2I 1P 5M)
ref1	512	ref1	1	0	30M	*	0	0	GGGATCCTCTAGAGTCGACCTGCAGGCATG	*
r001	0	ref1	1	99	30M	*	0	0	GGGATCCTCTAGAGTCGACCTGCAGGCATG	*
r002	0	ref1	1	99	15M1I3P1I15M	*	0	0	GGGATCCTCTAGAGTAACGACCTGCAGGCATG	*
r003	0	ref1	1	99	15M2I1P2I15M	*	0	0	GGGATCCTCTAGAGTACTACGACCTGCAGGCATG	*
r004	0	ref1	1	99	15M5I15M	*	0	0	GGGATCCTCTAGAGTACGTACGACCTGCAGGCATG	*
r005	0	ref1	1	99	15M1I1P1I1P1I15M	*	0	0	GGGATCCTCTAGAGTAGACGACCTGCAGGCATG	*
r006	0	ref1	1	99	15M2P1I2P15M	*	0	0	GGGATCCTCTAGAGTGCGACCTGCAGGCATG	*
r007	0	ref1	1	99	15M1P4I15M	*	0	0	GGGATCCTCTAGAGTCGTACGACCTGCAGGCATG	*
r008	0	ref1	1	99	15M2P3I15M	*	0	0	GGGATCCTCTAGAGTGTACGACCTGCAGGCATG	*
r009	0	ref1	1	99	15M3P2I15M	*	0	0	GGGATCCTCTAGAGTTACGACCTGCAGGCATG	*
r010	0	ref1	1	99	15M4P1I15M	*	0	0	GGGATCCTCTAGAGTACGACCTGCAGGCATG	*
r011	0	ref1	1	99	15M1I4P15M	*	0	0	GGGATCCTCTAGAGTACGACCTGCAGGCATG	*
r012	0	ref1	1	99	15M2I3P15M	*	0	0	GGGATCCTCTAGAGTACCGACCTGCAGGCATG	*
r013	0	ref1	1	99	15M3I2P15M	*	0	0	GGGATCCTCTAGAGTACGCGACCTGCAGGCATG	*
r014	0	ref1	1	99	15M4I1P15M	*	0	0	GGGATCCTCTAGAGTACGTCGACCTGCAGGCATG	*
r015	0	ref1	6	99	10M	*	0	0	CCTCTAGAGT	*
r016	0	ref1	7	99	9M1I	*	0	0	CTCTAGAGTA	*
r017	0	ref1	8	99	8M2I	*	0	0	TCTAGAGTAC	*
r018	0	ref1	9	99	7M3I	*	0	0	CTAGAGTACG	*
r019	0	ref1	10	99	6M4I	*	0	0	TAGAGTACGT	*
r020	0	ref1	11	99	5M5I	*	0	0	AGAGTACGTA	*
r021	0	ref1	12	99	4M5I1M	*	0	0	GAGTACGTAC	*
r022	0	ref1	13	99	3M5I2M	*	0	0	AGTACGTACG	*
r023	0	ref1	14	99	2M5I3M	*	0	0	GTACGTACGA	*
r024	0	ref1	15	99	1M5I4M	*	0	0	TACGTACGAC	*
r025	0	ref1	16	99	5I5M	*	0	0	ACGTACGACC	*
r026	0	ref1	16	99	1P4I6M	*	0	0	CGTACGACCT	*
r027	0	ref1	16	99	2P3I7M	*	0	0	GTACGACCTG	*
r028	0	ref1	16	99	3P2I8M	*	0	0	TACGACCTGC	*
r029	0	ref1	16	99	4P1I9M	*	0	0	ACGACCTGCA	*
r030	0	ref1	16	99	10M	*	0	0	CGACCTGCAG	*
r031	0	ref1	7	99	10M	*	0	0	CTCTAGAGTC	*
r032	0	ref1	8	99	10M	*	0	0	TCTAGAGTCG	*
r033	0	ref1	9	99	10M	*	0	0	CTAGAGTCGA	*
r034	0	ref1	10	99	10M	*	0	0	TAGAGTCGAC	*
r035	0	ref1	11	99	10M	*	0	0	AGAGTCGACC	*
r036	0	ref1	12	99	10M	*	0	0	GAGTCGACCT	*
r037	0	ref1	13	99	10M	*	0	0	AGTCGACCTG	*
r038	0	ref1	14	99	10M	*	0	0	GTCGACCTGC	*
r039	0	ref1	15	99	10M	*	0	0	TCGACCTGCA	*
r040	0	ref1	11	99	4M1D5M	*	0	0	AGAGCGACC	*
r041	0	ref1	11	99	5M1D4M	*	0	0	AGAGTGACC	*
r042	0	ref1	11	99	4M2D4M	*	0	0	AGAGGACC	*
r043	0	ref1	11	99	4M1D4P1I5M	*	0	0	AGAGACGACC	*
r044	0	ref1	11	99	4M1D5I5M	*	0	0	AGAGACGTACGACC	*
r045	0	ref1	11	99	5M5I1D4M	*	0	0	AGAGTACGTAGACC	*
r046	0	ref1	11	99	4M1D5I1D4M	*	0	0	AGAGACGTAGACC	*
r047	0	ref1	11	99	4M1D1I1P1I1P1I1D4M	*	0	0	AGAGAGAGACC	*
r048	0	ref1	11	99	5M3I7S	*	0	0	AGAGTACGTACGACC	*
r049	0	ref1	11	99	5M1P2I7S	*	0	0	AGAGTCGTACGACC	*
r050	0	ref1	16	99	7S2P3I5M	*	0	0	AGAGTACGTACGACC	*
r051	0	ref1	16	99	7S3P2I5M	*	0	0	AGAGTACTACGACC	*
r052	0	ref1	16	99	7S2P2I1P5M	*	0	0	AGAGTACGTCGACC	*
