Package picard.vcf
Class GenotypeConcordanceScheme
- java.lang.Object
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- picard.vcf.GenotypeConcordanceScheme
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- Direct Known Subclasses:
GA4GHScheme,GA4GHSchemeWithMissingAsHomRef
public abstract class GenotypeConcordanceScheme extends Object
This defines for each valid TruthState and CallState tuple, the set of contingency table entries that to which the tuple should contribute.
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Field Summary
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Constructor Summary
Constructors Constructor Description GenotypeConcordanceScheme()
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Method Summary
All Methods Instance Methods Abstract Methods Concrete Methods Modifier and Type Method Description protected voidaddRow(GenotypeConcordanceStates.CallStatenbsp;callStatebsp;callContext, String callSample, java.lang.GenotypeConcordance var pathtoroot = "../../"; var useModuleDirectories = true="search">Se/java/lDefaultHea pat"text/javasccalculateNonRefGenotypeConcordance(picard.vcf.GenotypeConcordanceScheme,boolean)">calculateNonRefGenotypeConcordance(increment
increment
increment
increment
increment
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