Changes
INSTALL
INSTALL.html
MANIFEST
Makefile.PL
README
create-manifest.sh
go-perl.pod
GO/Basic.pm
GO/ObjCache.pm
GO/ObjFactory.pm
GO/Parser.pm
GO/Utils.pm
GO/Handlers/abstract_prolog_writer.pm
GO/Handlers/abstract_sql_writer.pm
GO/Handlers/base.pm
GO/Handlers/go_def.pm
GO/Handlers/go_ont.pm
GO/Handlers/go_xref.pm
GO/Handlers/godb_prestore.pm
GO/Handlers/lexanalysis.pm
GO/Handlers/lexanalysis2sql.pm
GO/Handlers/obj.pm
GO/Handlers/obj_storable.pm
GO/Handlers/obj_yaml.pm
GO/Handlers/obo.pm
GO/Handlers/obo_godb_flat.pm
GO/Handlers/obo_html.pm
GO/Handlers/obo_sxpr.pm
GO/Handlers/obo_text.pm
GO/Handlers/obo_xml.pm
GO/Handlers/owl.pm
GO/Handlers/owl_to_obo_text.pm
GO/Handlers/pathlist.pm
GO/Handlers/prolog.pm
GO/Handlers/rdf.pm
GO/Handlers/summary.pm
GO/Handlers/sxpr.pm
GO/Handlers/tbl.pm
GO/Handlers/text_html.pm
GO/Handlers/xml.pm
GO/Handlers/xsl_base.pm
GO/IO/Analysis.pm
GO/IO/Blast.pm
GO/IO/Dotty.pm
GO/IO/OBDXML.pm
GO/IO/ObanOwl.pm
GO/IO/RDFXML.pm
GO/IO/XML.pm
GO/IO/go_assoc.pm
GO/Model/Association.pm
GO/Model/CrossProduct.pm
GO/Model/DB.pm
GO/Model/Evidence.pm
GO/Model/GeneProduct.pm
GO/Model/Graph.pm
GO/Model/GraphIterator.pm
GO/Model/GraphNodeInstance.pm
GO/Model/LogicalDefinition.pm
GO/Model/Modification.pm
GO/Model/Ontology.pm
GO/Model/Path.pm
GO/Model/Property.pm
GO/Model/Relationship.pm
GO/Model/Restriction.pm
GO/Model/Root.pm
GO/Model/Seq.pm
GO/Model/Species.pm
GO/Model/Term.pm
GO/Model/TreeIterator.pm
GO/Model/Xref.pm
GO/Parsers/ParserEventNames.pm
GO/Parsers/base_parser.pm
GO/Parsers/generic_tagval_parser.pm
GO/Parsers/go_assoc_parser.pm
GO/Parsers/go_def_parser.pm
GO/Parsers/go_ids_parser.pm
GO/Parsers/go_ont_parser.pm
GO/Parsers/go_xref_parser.pm
GO/Parsers/locuslink_parser.pm
GO/Parsers/mesh_parser.pm
GO/Parsers/mgi_assoc_parser.pm
GO/Parsers/ncbi_taxon_names_parser.pm
GO/Parsers/ncbi_taxonomy_parser.pm
GO/Parsers/obj_emitter.pm
GO/Parsers/obj_storable_parser.pm
GO/Parsers/obj_yaml_parser.pm
GO/Parsers/obo_parser.pm
GO/Parsers/obo_text_parser.pm
GO/Parsers/obo_xml_parser.pm
GO/Parsers/owl_parser.pm
GO/Parsers/references_parser.pm
GO/Parsers/refgenomes_parser.pm
GO/Parsers/unknown_format_parser.pm
GO/Parsers/xrf_abbs_parser.pm
doc/go-perl-doc.html
doc/go-perl-event-handling.html
doc/gomodel.dia
doc/gomodel.png
doc/map2slim.gif
doc/stylesheet.css
scripts/go-apply-xslt
scripts/go-dag-summary.pl
scripts/go-export-graph.pl
scripts/go-export-prolog.pl
scripts/go-filter-subset.pl
scripts/go-make-slim.pl
scripts/go-perl-make-pod-html.pl
scripts/go-show-assocs-by-node.pl
scripts/go-show-paths-to-root.pl
scripts/go-validate-xml
scripts/go2chadoxml
scripts/go2error_report
scripts/go2fmt.pl
scripts/go2godb_prestore
scripts/go2obo
scripts/go2obo_html
scripts/go2obo_text
scripts/go2obo_xml
scripts/go2owl
scripts/go2owl_simple
scripts/go2pathlist
scripts/go2prolog
scripts/go2racer
scripts/go2rdf
scripts/go2rdfxml
scripts/go2summary
scripts/go2sxpr
scripts/go2tbl
scripts/go2text_html
scripts/go2xml
scripts/ipr2obo
scripts/ipr2obo_xml
scripts/map2slim
scripts/obo-cat.pl
scripts/obo-cvs-log-and-diff.pl
scripts/obo-extract-xrefs.pl
scripts/obo-filter-tags.pl
scripts/obo-grep.pl
scripts/obo-merge-tags.pl
scripts/obo-promote-dbxref-to-intersection.pl
scripts/obo-split.pl
scripts/obo-syntax-highlight-in-html.pl
t/t010build.t
t/t020paths.t
t/t030detecterror.t
t/t050oboformat.t
t/t060oboformat2.t
t/t070parseannot2obj.t
t/t080gofmt2.t
t/t100roundtrip.t
t/t110basic.t
t/t120rt.sh
t/t130relations.t
t/t140subgraph.t
t/t150xref.t
t/t160logicaldef.t
t/t170chadoxml.t
t/t175chadoxml_oborel.t
t/t180ncbi_taxonomy.t
t/t200impliedlinks.t
t/t210cache.t
t/t220xref_esc.t
t/t230term_expression.t
t/t240ga2obj.t
t/t260oborel_in_chado.t
t/t270oborel_in_owl.t
t/t290disjoint.t
t/validate_all.x
t/data/GO.defs
t/data/bad-dbxref.obo
t/data/gene_association.test_properties
t/data/generic.0208
t/data/go-truncated.obo
t/data/go-with-local-id-mapping.obo
t/data/impliedlinks.obo
t/data/llm.obo
t/data/llm2.obo
t/data/mged.obo
t/data/process.ontology
t/data/regulation_of_somitogenesis.obo
t/data/regulation_test.obo
t/data/relationship.obo
t/data/sample.ncbi_taxonomy
t/data/spkw2go
t/data/systematic_synonym_test.obo
t/data/test-function.dat
t/data/test-gene_association.fb
t/data/test-go.obo
t/data/test-nucleolar.obo
t/data/test2.ontology
t/data/test_bad_function.dat
t/data/xref_encoding_test.obo
GO/xsl/chadoxml_to_oboxml.xsl
GO/xsl/ipr_to_oboxml.xsl
GO/xsl/oboxml_filter.xsl
GO/xsl/oboxml_to_chadoxml.xsl
GO/xsl/oboxml_to_dig.xsl
GO/xsl/oboxml_to_godb_prestore.xsl
GO/xsl/oboxml_to_obd_prestore.xsl
GO/xsl/oboxml_to_obotext.xsl
GO/xsl/oboxml_to_owl.xsl
GO/xsl/oboxml_to_racer.xsl
GO/xsl/oboxml_to_simple_owl.xsl
GO/xsl/oboxml_to_summary_table.xsl
GO/xsl/owl_to_oboxml.xsl
META.yml                                 Module meta-data (added by MakeMaker)
