GENESIS Reference ManualMay 5, 2001: Simulation Schedules

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## 16. Simulation Schedules

When a request is made to execute a simulation with the step command, the simulator determines what to do by consulting the simulation ``schedule'' -- a list of operations which are to be performed in the specified order for each simulation step. For example, the default schedule for GENESIS simulations is given in the script startup/schedule.g, which contains:

         deletetasks

         addtask Simulate /##[CLASS=buffer]      -action INIT
         addtask Simulate /##[CLASS=segment]     -action INIT
         addtask Simulate /##[CLASS=device]      -action INIT
         addtask Simulate /##[CLASS=buffer]      -action PROCESS
         addtask Simulate /##[CLASS=projection]  -action PROCESS
         addtask Simulate /##[CLASS=spiking]     -action PROCESS
         addtask Simulate /##[CLASS=gate] -action PROCESS
         addtask Simulate /##[CLASS=segment][CLASS!=membrane][CLASS!=gate] \
            [CLASS!=concentration][CLASS!=concbuffer] -action PROCESS
         addtask Simulate /##[CLASS=membrane]    -action PROCESS
         addtask Simulate /##[CLASS=hsolver]     -action PROCESS
         addtask Simulate /##[CLASS=concentration]       -action PROCESS
         addtask Simulate /##[CLASS=concbuffer]  -action PROCESS
         addtask Simulate /##[CLASS=device]      -action PROCESS
         addtask Simulate /##[CLASS=output]      -action PROCESS

         resched

Each operation listed in the schedule is simply a compiled C function (listed by its C name) with optional arguments. The C function used by default is named ``Simulate'', and it is called with two arguments: a wildcard path specification indicating the set of elements affected, and the element-type action to perform for that class of elements during the simulation step.

Scheduling provides a way to specify the order of events within a given simulation step, in terms of which elements will be computed in what sequence. For example, you may verify, using the showobject command to determine the class memberships, that using the default schedule listed above, the PROCESS action is carried out on a tabgate element before it is carried out on a vdep_channel to which it might be coupled. The compartment containing this channel will execute the PROCESS action after the channel. This insures that all computations are performed in the proper order.

If you need to have the computations for the elements in your simulation run in a specific order, you could define your own simulation schedule. Note that the simulation schedule gives no control over the order in which the RESET action is performed, however. If the initial state of one element depends on the initial state of another element, you may need to call the RESET action for specific elements in the proper order. Further details are given in the section on Actions and the documentation for reset .

The following GENESIS routines are used for establishing and working with simulation schedules. The documentation for addtask gives more information on constructing your own simulation schedules.

Routine | Description
addtask | Adds a simulation event to the simulation schedule.
deletetasks | Removes all simulation events from the simulation schedule.
resched | Assigns elements for simulation according to the
| current simulation schedule.
showsched | Displays current working simulation schedule.

Whether you create a new schedule or not, you should also run the check routine, which analyzes the simulation schedule to check for conflicts or inconsistencies. For example, you should always run check if you change the schedule or add or remove any simulation elements; you may need to just run resched, or revise the schedule itself.

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