// Copyright (c) 2011-2013, Pacific Biosciences of California, Inc.
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// Author: David Alexander

#pragma once

#include <utility>
#include <vector>

namespace ConsensusCore {

    class Mutation;

    struct DiploidSite {
        int Allele0;
        int Allele1;
        float LogBayesFactor;
        std::vector<int> AlleleForRead;
        DiploidSite(int, int, float, std::vector<int>);
    };

    // NB: The prototype
    //  (float* siteScores, int dim1, int dim2)
    // gets transformed to just
    //  (siteScores)
    // for Python by SWIG.
    DiploidSite*
    IsSiteHeterozygous(const float *siteScores, int dim1, int dim2,
                       float logPriorRatio);
}
