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The commands/keywords currently recognised by RasMol are given below.
Backbone Background Centre
Clipboard Colour Connect
CPK Dots Define
Echo Exit HBonds
Help Label Load
Print Quit Renumber
Reset Restrict Ribbons
Rotate Save Script
Select Set Show
Slab Source Spacefill
SSBonds Strands Structure
Trace Translate Wireframe
Write Zap Zoom
Syntax: backbone {<boolean>}
backbone <value>
The RasMol backbone command permits the representation of a polypeptide backbone as a series of bonds connecting the adjacent alpha carbons of each amino acid in a chain. The display of these backbone `bonds' is turned on and off by the command paramater the same as the wireframe command. The command backbone off turns off the selected `bonds', and backbone on or with a number turns them on. The number can be used to specify the cylinder radius of the representation in either angstrom or rasmol units. A parameter value of 500 (2.0 angstroms) or above results in a "Parameter value too large" error. Backbone objects may be coloured using the RasMol colour backbone command.
The reserved work backbone is also used as a predefined set and as a parameter to the set hbond and set ssbond commands. The RasMol command trace is synonymous with the command backbone.
Syntax: background <colour>
The RasMol background command is used to set the colour of the "canvas" background. The colour may be given as either a colour name or a comma separated triple of Red, Green and Blue (RGB) components enclosed in square brackets. Typing the command help colours will give a list of the predefined colour names recognised by RasMol. When running under X Windows, RasMol also recognises colours in the X server's colour name database.
The background command is synonymous with the RasMol set background command.
Syntax: center {<expression>}
centre {<expression>}
The RasMol centre command defines the point about which the rotate command and the scroll bars rotate the current molecule. Without a parameter the centre command resets the centre of rotation to be the centre of gravity of the molecule. If an atom expression is specified, RasMol rotates the molecule about the centre of gravity of the set of atoms specified by the expression. Hence, if a single atom is specified by the expression, that atom will remain `stationary' during rotations.
Type help expression for more information on RasMol atom expressions.
Syntax: clipboard
The RasMol clipboard command places a copy of the currently displayed image on the local graphics `clipboard'. Note: this command is not yet supported on UNIX or VMS machines. It is intended to make transfering images between applications easier under Microsoft Windows or on an Apple Macintosh.
When using RasMol on a UNIX or VMS system this functionality may be achieved by generating a raster image in a format that can be read by the receiving program using the RasMol write command.
Syntax: colour {<object>} <colour>
color {<object>} <colour>
Colour the atoms (or other objects) of the selected region. The colour may be given as either a colour name or a comma separated triple of Red, Green and Blue (RGB) components enclosed in square brackets. Typing the command help colours will give a list of all the predefined colour names recognised by RasMol.
Allowed objects are
atoms,
bonds,
backbone,
ribbons
labels
dots,
hbonds,
and
ssbonds.
If no object is specified, the default keyword
atom
is assumed.
Some colour schemes are defined for certain object types. The colour scheme
none
can be applied all objects accept atoms and dots, stating that the selected
objects have no colour of their own, but use the colour of their associated
atoms (i.e. the atoms they connect).
Atom
objects can also be coloured by
cpk,
amino,
chain,
group,
shapely,
structure,
temperature
charge
and
user. Hydrogen bonds can also be coloured by
type
and dot surfaces can also be coloured by
electrostatic potential.
For more information type
help colour
Syntax: connect {<boolean>}
The RasMol connect command is used to force RasMol to (re)calculate the connectivity of the current molecule. If the original input file contained connectivity information, this is discarded. The command connect false uses an extremely fast heuristic algorithmm that is suitable for determing bonding in large bio-molecules such as proteins and nucleic acids. The command connect true uses a slower more accurate algorithm based upon covalent radii that is more suitable for small molecules containing inorganic elements or strained rings. If no parameters are given, RasMol determines which algorithm to use based on the number of atoms in the file. Greater than 255 atoms causes RasMol to use the faster implementation. This is the method used to determine bonding, if necessary, when a molecule is first read in using the load command.
Syntax: define <identifier> <expression>
The RasMol define command allows the user to associate an arbitrary set of atoms with a unique identifier. This allows the definition of user-defined sets. These sets are declared statically, i.e. once defined the contents of the set do not change, even if the expression defining them depends on the current transformation and representation of the molecule.
Syntax: dots {<boolean>}
dots <value>
The RasMol dots command is used to generate a Van der Waal's dot surface around the currently selected atoms. Dot surfaces display regularly spaced points on a sphere of Van der Waals' radius about each selected atom. Dots that would are `buried' within the Van der Waal's radius of any other atom (selected or not) are not displayed. The command dots on deletes any existing dot surface and generates a dots surface around the currently selected atom set with a default dot density of 100. The command dots off deletes any existing dot surface. The dot density may be specified by providing a numeric parameter between 1 and 1000. This value approximately corresponds to the number of dots on the surface of a medium sized atom.
By default, the colour of each point on a dot surface is the colour of it's closest atom at the time the surface is generated. The colour of the whole dot surface may be changed using the colour dots command.
Syntax: echo {<string>}
The RasMol echo command is used to display a message in the RasMol command/terminal window. The string parameter may optionally be delimited in double quote characters. If no parameter is specified, the echo command displays a blank line. This command is particularly useful for displaying text from within a RasMol script file.
Syntax: hbonds {<boolean>}
hbonds <value>
The RasMol hbond command is used to represent the hydrogen bonding of the protein molecule's backbone. This information is useful in assessing the protein's secondary structure. Hydrogen bonds are represented as either dotted lines or cylinders between the donor and acceptor residues. The first time the hbond command is used, the program searches the structure of the molecule to find hydrogen bonded residues and reports the number of bonds to the user. The command hbonds on displays the selected `bonds' as dotted lines, and the hbonds off turns off their display. The colour of hbond objects may be changed by the colour hbond command. Initially, each hydrogen bond has the colours of its connected atoms.
By default the dotted lines are drawn between the accepting oxygen and the donating nitrogen. By using the set hbonds command the alpha carbon positions of the appropriate residues may be used instead. This is especially useful when examining proteins in backbone representation.
Syntax: help {<topic> {<subtopic>}}
? {<topic> {<subtopic>}}
The RasMol help command provides on-line help on the given topic.
Syntax: label {<string>}
label <boolean>
The RasMol label command allows an arbitrary formatted text string to be associated with each currently selected atom. This string may contain embedded `expansion specifiers' which display properties of the atom being labelled. An expansion specifier consists of a `%' character followed by a single alphabetic character specifying the property to be displayed (similar to C's printf syntax). An actual '%' character may be displayed by using the expansion specifier `%%'.
Atom labelling for the currently selected atoms may be turned off with the command label off. By default, if no string is given as a parameter RasMol uses labels appropriate for the current molecule. RasMol uses the label "%n%r:%c.%a" if the molecule contains more than one chain, "%e%i" if the molecule has only a single residue (a small molecule) and "%n%r.%a" otherwise.
The colour of each label may be changed using the colour label command. By default, each label is drawn in the same colour as the atom to which it is attached. The size of the displayed text may be changed using the set fontsize command.
The following table lists the current expansion specifiers:
%a Atom Name
%b %t B-factor/Temperature
%c %s Chain Identifier
%e Element Atomic Symbol
%i Atom Serial Number
%n Residue Name
%r Residue Number
Syntax: load {<format>} <filename>
Load a molecule co-ordinate file into RasMol2. Valid molecule file formats are pdb (Brookhaven Protein Databank), mdl (Molecular Design Limited's MOL file format), alchemy (Tripos' Alchemy file format), mol2 (Tripos' Sybyl Mol2 file format), charmm (CHARMm file format) or xyz (MSC's XMol XYZ file format). If no file format is specified, pdb is assumed by default. Only a single molecule may be loaded at a time. To delete a molecule prior to loading another use the RasMol zap command.
The load command selects all the atoms in the molecule, centres it on the screen and renders it as a CPK coloured wireframe model. If the molecule contains no bonds (i.e. contains only alpha carbons), it is drawn as an alpha carbon backbone. If the file specifies less bonds than atoms, RasMol determines connectivity using the connect command.
Syntax: print
The RasMol print command sends the currently displayed image to the local default printer using the operating system's native printer driver. Note: this command is not yet supported under UNIX or VMS. It is intended to take advantage of Microsoft Windows and Apple Macintosh printer drivers. For example, allowing images to be printed directly on a dot matrix printer.
When using RasMol on a UNIX or VMS system this functionality may be achieved by either generating a PostScript file using the RasMol write ps or write vectps commands and printing that or generating a raster image file and using a utility to dump that to the local printer.
Syntax: quit
exit
Exit from the RasMol program. The RasMol commands exit and quit are synonymous.
Syntax: renumber {{-} <value>}
The RasMol renumber command sequentially numbers the residues in a macromolecular chain. The optional parameter specifies the value of the first residue in the sequence. By default, this value is one. For proteins, each amino acid is numbered consecutively from the N terminus to the C terminus. For nucleic acids, each base is numbered from the 5' terminus to 3' terminus. All chains in the current database are renumbered and gaps in the original sequence are ignored. The starting value for numbering may be negative.
Syntax: reset
The RasMol reset command restores the original viewing transformation and centre of rotation. The scale is set to it default value, zoom 100, the centre of rotation is set to the geometric centre of the currently loaded molecule, centre all, this centre is translated to the middle of the screen and the viewpoint set to the default orientation.
This command should not be mistaken for the RasMol zap command which deletes the currently stored molecule, returning the program to its initial state.
Syntax: restrict {<expression>}
The RasMol restrict command both defines the currently selected region of the molecule and disables the representation of (most of) those parts of the molecule no longer selected. All subsequent RasMol commands that modify a molecule's colour or representation effect only the currently selected region. The parameter of a restrict command is a RasMol atom expression that is evaluated for every atom of the current molecule. This command is very similar to the RasMol select command, except restrict disables the wireframe, spacefill and backbone representations in the non-selected region.
Type "help expression" for more information on RasMol atom expressions.
Syntax: ribbons {<boolean>}
ribbons <value>
The RasMol ribbons command displays the currently loaded protein or nucleic acid as a smooth solid "ribbon" surface passing along the backbone of the protein. The ribbon is drawn between each amino acid whose alpha carbon is currently selected. The colour of the ribbon is changed by the RasMol colour ribbon command. If the current ribbon colour is none (the default), the colour is taken from the alpha carbon at each position along its length.
The width of the ribbon at each position is determined by the optional parameter in the usual RasMol units. By default the width of the ribbon is taken from the secondary structure of the protein or a constant value of 720 (2.88 Angstroms) for nucleic acids. The default width of protein alpha helices and beta sheets is 380 (1.52 Angstroms) and 100 (0.4 Angstroms) for turns and random coil. The secondary structure assignment is either from the PDB file or calculated using the DSSP algorithm as used by the structure command. This command is similar to the RasMol command strands which renders the biomolecular ribbon as parallel depth-cued curves.
Syntax: rotate <axis> {-} <value>
Rotate the molecule about the specified axis. Permited values for the axis parameter are "<tt><b>x</b></tt>", "<tt><b>y</b></tt>" and "<tt><b>z</b></tt>". The integer parameter states the angle in degrees for the structure to be rotated. For the X and Y axes, positive values move the closest point up and right, and negative values move it down and left respectively. For the Z axis, a positive rotation acts clockwise and a negative angle anti-clockwise.
Syntax: save {pdb} <filename>
save alchemy <filename>
Save the currently selected set of atoms in either a Brookhaven Protein Database (PDB) or Alchemy(tm) format file. The distinction between this command and the RasMol write command has been dropped. The only difference is that without a format specifier the save command generates a PDB file and the write command generates a GIF image.
Syntax: script <filename>
The RasMol script command reads a set of RasMol commands sequentially from a text file and executes them. This allows sequences of commonly used commands to be stored and performed by single command. A RasMol script file may contain a further script command up to a maximum "depth" of 10, allowing compilicated sequences of actions to be executed. RasMol ignores all characters after the first '#' character on each line allowing the scripts to be annotated. Script files are often also annotated using the RasMol echo command.
The most common way to generate a RasMol script file is to use the write script or write rasmol commands to output the sequence of commands that are needed to regenerate the current view, representation and colouring of the currently displayed molecule.
The RasMol command source is synonymous with the script command.
Syntax: select {<expression>}
Define the currently selected region of the molecule. All subsequent RasMol commands that manipulate a molecule or modify its colour or representation, only effects the currently selected region. The parameter of a select command is a RasMol expression that is evaluated for every atom of the current molecule. The currently selected (active) region of the molecule are those atoms that cause the expression to evaluate true. To select the whole molecule use the RasMol command select all. The behaviour of the select command without any parameters is determined by the RasMol hetero and hydrogen parameters.
Type "help expression" for more information on RasMol atom expressions.
Syntax: set <parameter> {<option>}
The RasMol set command allows the user to alter various internal program parameters such as those controlling rendering options. Each parameter has its own set or permissible parameter options. Typically, ommiting the paramter option resets that parameter to its default value. A list of valid parameter names is given below.
Ambient Axes Background
BondMode BoundBox Display
FontSize HBonds Hetero
HourGlass Hydrogen Kinemage
Menus Mouse Radius
Shadow SlabMode Solvent
Specular SpecPower SSBonds
Strands UnitCell VectPS
Syntax: show information
show sequence
show symmetry
The RasMol show command display details of the status of the currently loaded molecule. The command show information lists the molecule's name, classification, PDB code and the number of atoms, chains, groups it contains. If hydrogen bonding, disulphide bridges or secondary structure have been determined, the number of hbonds, ssbonds, helices, ladders and turns are also displayed respectively. The command show sequence lists the residues that compose each chain of the molecule.
Syntax: slab {<boolean>}
slab <value>
The RasMol slab command enables, disables or positions the z-clipping plane of the molecule. The program only draws those portions of the molecule that are further from the viewer than the slabbing plane. Values range from zero at the very back of the molecule to 100 which is completely in front of the molecule. Intermediate values determine the percentage of the molecule to be drawn.
Syntax: spacefill {<boolean>}
spacefill temperature
spacefill user
spacefill <value>
The RasMol spacefill command is used to represent all of the currently selected atoms as solid spheres. This command is used to produce both union-of-spheres and ball-and-stick models of a molecule. The command, spacefilll true, the default, represents each atom as a sphere of Van der Waals radius. The command spacefill off turns off the representation of the selected atom as spheres. A sphere radius may be specified as an integer in RasMol units (1/250th Angstrom) or a value containing a decimal point. A value of 500 (2.0 Angstroms) or greater results in a "Parameter value too large" error.
The temperature option sets the radius of each sphere to the value stored in its temperature field. Zero or negative values causes have no effect and values greater than 2.0 are truncated to 2. The user option allows the radius of each spheres to be specified by additional lines in the molecule's PDB file using Raster 3D's COLOR record extension.
The RasMol command cpk is synonymous with the spacefill command.
Syntax: ssbonds {<boolean>}
ssbonds <value>
The RasMol ssbonds command is used to represent the disulphide bridges of the protein molecule as either dotted lines or cylinders between the connected cysteines. The first time that the ssbonds command is used, the program searches the structure of the protein to find half-cysteine pairs (cysteines whose sulphurs are within 3 angstroms of each other) and reports the number of bridges to the user. The command ssbonds on displays the selected `bonds' as dotted lines, and the command ssbonds off disables the display of ssbonds in the currently selected area. Selection of disulphide bridges is identical to normal bonds, and may be adjusted using the RasMol set bondmode command. The colour of disulphide bonds may be changed using the colour ssbonds command. By default, each disulphide bond has the colours of its connected atoms.
By default disulphide bonds are drawn between the sulphur atoms within the cysteine groups. By using the set ssbonds command the position of the cysteine's alpha carbons may be used instead.
Syntax: strands {<boolean>}
strands <value>
The RasMol strands command displays the currently loaded protein or nucleic acid as a smooth "ribbon" of depth-cued curves passing along the backbone of the protein. The ribbon is composed of a number of strands that run parallel to one another along the peptide plane of each residue. The ribbon is drawn between each amino acid whose alpha carbon is currently selected. The colour of the ribbon is changed by the RasMol colour ribbon command. If the current ribbon colour is none (the default), the colour is taken from the alpha carbon at each position along its length. The colour of the central and outermost strands may be coloured independently using the colour ribbon1 and colour ribbon2 commands respectively. The number of strands in the ribbon may be altered using the RasMol set strands command.
The width of the ribbon at each position is determined by the optional parameter in the usual RasMol units. By default the width of the ribbon is taken from the secondary structure of the protein or a constant value of 720 for nucleic acids (which produces a ribbon 2.88 Angstroms wide). The default width of protein alpha helices and beta sheets is 380 (1.52 Angstroms) and 100 (0.4 Angstroms) for turns and random coil. The secondary structure assignment is either from the PDB file or calculated using the DSSP algorithm as used by the structure command. This command is similar to the RasMol command ribbons which renders the biomolecular ribbon as a smooth shaded surface.
Syntax: structure
The RasMol structure command calculates secondary structure assignments for the currently loaded protein. If the original PDB file contained structural assignment records (HELIX and SHEET) these are discarded. Initially, the hydrogen bonds of the current molecule are found, if this hasn't been done already. The secondary structure is the determined using Kabsch and Sander's DSSP algorithm. Once finished the program reports the number of helices, strands and turns found.
Syntax: translate <axis> {-} <value>
The RasMol translate command moves the position of the centre of the molecule on the screen. The axis parameter specifies along which axis the molecule is to be moved and the integer parameter specifies the absolute position of the molecule centre from the middle of the screen. Permited values for the axis parameter are "<tt><b>x</b></tt>", "<tt><b>y</b></tt>" and "<tt><b>z</b></tt>". Displacement values must be between -100 and 100 which correspond to moving the current molecule just off the screen. A positive "<tt><b>x</b></tt>" displacement moves the molecule to the right, and a positive "<tt><b>y</b></tt>" displacement moves the molecule down the screen. The pair of commands translate x 0 and translate y 0 centres the molecule on the screen.
Syntax: wireframe {<boolean>}
wireframe <value>
The RasMol wireframe command represents each bond within the selected region of the molecule as either a cylinder, a line or depth-cued vector. The display of bonds as depth-cued vectors (drawn darker the further away from the viewer) is turned on by the command wireframe or wireframe on. The selected bonds are displayed as cylinders by specifying a radius either as an integer in RasMol units or containing a decimal point as a value in Angstroms. A parameter value of 500 (2.0 angstroms) or above results in an "Parameter value too large" error. Bonds may be coloured using the colour bonds command.
Syntax: write {<format>} <filename>
Write the current image to a file in a standard raster format. Currently supported image file formats include "gif" (Compuserve GIF), "ppm" (Portable Pixmap), "ras" (Sun rasterfile), "ps" and "epsf" (Encapsulated PostScript), "monops" (Monochrome Encapsulated PostScript), "bmp" (Microsoft bitmap) and "pict" (Apple PICT). The write command may also be used to generate command scripts for other graphics programs. The format script writes out a file containing the RasMol script commands to reproduce the current image. The format molscript writes out the commands required to render the current view of the molecule as ribbons in Per Kraulis' Molscript program and the format kinemage the commands for David Richardson's program Mage.
The distinction between this command and the RasMol save command has been dropped. The only difference is that without a format specifier the save command generates a PDB file and the write command generates a GIF image.
Syntax: zap
Deletes the contents of the current database and resets parameter variables to their initial default state.
Syntax: zoom {<boolean>}
zoom <value>
Change the magnification of the currently displayed image. Boolean parameters either magnify or reset the scale of current molecule. An integer parameter specifies the desired magnification as a percentage of the default scale. The minimum parameter value is 10, the maximum parameter value is dependent upon the size of the molecule being displayed. For medium sized proteins this is about 500.
A complete list of internal parameter names is given below.
Ambient Axes Background
BondMode BoundBox Display
FontSize HBonds Hetero
HourGlass Hydrogen Kinemage
Menus Mouse Radius
Shadow SlabMode Solvent
Specular SpecPower SSBonds
Strands UnitCell VectPS
Syntax: set ambient {<value>}
The RasMol ambient parameter is used to control the amount of ambient (or surrounding) light in the scene. The ambient value must be between 0 and 100 that controls the percentage intensity of the darkest shade of an object. For a solid object, this is the intensity of surfaces facing away from the light source or in shadow. For depth-cued objects this is the intensity of objects furthest from the viewer.
This parameter is commonly used to correct for monitors with different "gamma values" (brightness), to change how light or dark a hardcopy image appears when printed or to alter the feeling of depth for wireframe or ribbon representations.
Syntax: set axes <boolean>
The RasMol axes parameter controls the display of orthogonal co-ordinate axes on the current display. The co-ordinate axes are those used in the molecule data file, and the origin is the centre of the molecule's bounding box. The set axes command is similar the the commands set boundbox and set unitcell that display the bounding box and the crystallographic unit cell respectively.
Syntax: set background {<colour>}
The RasMol background parameter is used to set the colour of the "canvas" background. The colour may be given as either a colour name or a comma separated triple of Red, Green, Blue (RGB) components enclosed in square brackets. Typing the command help colours will give a list of the predefined colour names recognised by RasMol. When running under X Windows, RasMol also recognises colours in the X server's colour name database.
The command set background is synonymous with the RasMol command background.
Syntax: set bondmode and
set bondmode or
The RasMol set bondmode command controls the mechanism used to select individual bonds. When using the select and restrict commands, a given bond will be selected if i) the bondmode is or and either of the connected atoms is selected, or ii) the bondmode is and and both atoms connected by the bond are selected. Hence an individual bond may be uniquely identified by using the command "set bondmode and" and then uniquely selecting the atoms at both ends.
Syntax: set boundbox <boolean>
The RasMol boundbox parameter controls the display of the current molecules bounding box on the display. The bounding box is orthogonal to the data file's original co-ordinate axes. The set boundbox command is similar the the commands set axes and set unitcell that display orthogonal co-ordinate axes and the bounding box respectively.
Syntax: set display selected
set display normal
This command controls the display mode within RasMol. By default, set display normal, RasMol displays the molecule in the representation specified by the user. The command set display selected changes the display mode such that the molecule is temporarily drawn so as to indicate currently selected portion of the molecule. The user specified colour scheme and representation remains unchanged. In this representation all selected atoms are shown in yellow and all non selected atoms are shown in blue. The colour of the background is also changed to a dark grey to indicate the change of display mode. This command is typically only used by external Graphical User Interfaces (GUIs).
Syntax: set hbonds backbone
set hbonds sidechain
The RasMol hbonds parameter determines whether hydrogen bonds are drawn between the donor and acceptor atoms of the hydrogen bond, set hbonds sidechain or between the alpha carbon atoms of the protein backbone and between the phosphorous atoms of the nucleic acid backbone, set hbonds backbone. The actual display of hydrogen bonds is controlled by the hbonds command. Drawing hydrogen bonds between protein alpha carbons or nucleic acid phosphorous atoms is useful when the rest of the molecule is shown in only a schematic representation such as backbone, ribbons or strands. his parameter is similar to the RasMol ssbonds parameter.
Syntax: set fontsize {<value>}
The RasMol set fontsize command is used to control the size of the characters that form atom labels. This value corresponds to the height of the displayed character in pixels. The maximum value of fontsize is 32 pixels, and the default value is 8 pixels high. To display atom labels on the screen use the RasMol label command and to change the colour of displayed labels, use the colour labels command.
Syntax: set hetero <boolean>
The RasMol hetero parameter is used to modify the `default' behaviour of the RasMol select command, i.e. the behaviour of select without any parameters. When this value is false, the default select region does not include an heterogenous atoms (refer to the predefined set hetero ). When this value is true, the default select region may contain hetero atoms. This parameter is similar to the RasMol hydrogen parameter which determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should be included in the default set. If both hetero and hydrogen are true, select without any parameters is equivalent to select all.
Syntax: set hourglass <boolean>
The RasMol hourglass parameter allows the user to enableich determines whether hydrogen atoms should b