BLIMPS (BLocks IMProved Searcher)   Version 3.8  2006/04
(C) Copyright 1993-2000, Fred Hutchinson Cancer Research Center



Block File: exampleA.blk

Target File (s) : example.pros

Records Searched:   89

Scores Done:                      89

Alignments Done:               62773

AC#                    Description                                                Score RF  AA# Length
TC1A_CAEBR|P35072     TRANSPOSABLE ELEMENT TCB1 TRANSPOSASE (TRANSPOSABLE ELEM      2915  0    52    273 KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG
TC1A_CAEEL|P03934     TRANSPOSABLE ELEMENT TC1 TRANSPOSASE                          2914  0    52    273 KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDG
TC2A_CAEBR|Q04202     TRANSPOSABLE ELEMENT TCB2 TRANSPOSASE                         2879  0    52    273 KKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDG
TC3A_CAEEL|P34257     TRANSPOSABLE ELEMENT TC3 TRANSPOSASE                          2670  0   109    329 KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG
OE66_NPVOP|O10305     OCCLUSION-DERIVED VIRUS ENVELOPE PROTEIN E66 (ODV-E66)        2056  0   437    682 KTaLAkTRtAGAiLvhARFAemNnLQFkSctLFyDhgmFQLyyniG
YP22_YEAST|Q08968     HYPOTHETICAL 78.3 KD PROTEIN IN SSM1-GRE1 INTERGENIC REG      2034  0   641    688 KKlyLmsvNpydRtKWdvTlrpeleTKWAdlshqDdAKFMMQaScS
RPOD_ORYSA|P12093     DNA-DIRECTED RNA POLYMERASE BETA" CHAIN (EC 2.7.7.6)          2016  0   865   1513 ggsLIPLereKKdsKesKkReNWvyvQWkKILkSkEKyFvLvrPav
NUCL_HUMAN|P19338     NUCLEOLIN (PROTEIN C23) | PS00030                             2012  0   379    706 pKgkdSKKeRDARtlLAKnlpyKvtQDelKeVFEDaAeIrLvskDG
YFEH_ECOLI|P39836     HYPOTHETICAL 36.4 KD PROTEIN IN XAPB-LIG INTERGENIC REGI      2007  0    37    332 tTaaIaLLffMHgaKLsREAiiaGGghWRlHLWvmcStFvLFpilG
YDF7_SCHPO|Q10479     PUTATIVE GLUCOSYLTRANSFERASE C17C9.07 (EC 2.4.1.-)            2006  0   240    501 mKqiPqLLSRlfpfSRgLcHayWaPnFWAlysFvDrvAFaVlprfG
ACVS_EMENI|P27742     DELTA-(L-ALPHA-AMINOADIPYL)-L-CYSTEINYL-D-VALINE SYNTHET      2005  0  2061   3770 EeaLyTiLSRheaLRtfLlRdqaTGTFyqKILtTDEAKcMLiiekS
MAOC_FLAPR|P36444     MALATE OXIDOREDUCTASE, CHLOROPLAST PRECURSOR (EC 1.1.1.4      2005  0   210    647 KnPqglyiSlKdKgKvLEilKNWPQkKiqvIVvTDGerIlglGdlG
MSH5_YEAST|Q12175     MUTS PROTEIN HOMOLOG 5 | PS00486                              2005  0   295    901 KswLInPLtnKKRiEtrysiiRtlLDKqNaIIFSDlSqsIkrcPDa
GLGA_METJA|Q59001     PROBABLE GLYCOGEN SYNTHASE (EC 2.4.1.21) (STARCH [BACTER      2004  0    53    521 dikkITviyKGAKiTFdvlRtKhPtTgvDlIVFSnESvnNLnVwDp
YQHN_BACSU|P54512     HYPOTHETICAL 16.7 KD PROTEIN IN GCVT-SPOIIIAA INTERGENIC      2004  0    55    142 KyRgLvLTSKGKKigkrLvYrHelLDQflrIIgvDEeKIynDVegi
NIFK_AZOVI|P07329     NITROGENASE MOLYBDENUM-IRON PROTEIN BETA CHAIN (EC 1.18.      1998  0   401    522 KKavdaiLaAspygKnAtvYigKDLwhlRslVFTDkpdFMIgnSYG
OE66_NPVAC|Q00704     OCCLUSION-DERIVED VIRUS ENVELOPE PROTEIN E66 (ODV-E66)        1993  0   460    704 qTaiAkTdtAGAiLvyAKFAemNnLQFkSctLFyDhgmFQLyyniG
SPCB_DROME|Q00963     SPECTRIN BETA CHAIN | PS00019 | PS00020 | PS50003             1989  0  1469   2291 EKIkAPLLeRqKaLEkkKEAfqfcRDveDekLWiDEKlpvansPDy
MAON_SOLTU|P37225     MALATE OXIDOREDUCTASE [NAD], MITOCHONDRIAL 59 KD ISOFORM      1988  0   144    601 rrPrgmyfSAKdKgEmmsmifNWPsTQvDmIVlTDGSrIlglGdlG
MAOX_POPTR|P34105     MALATE OXIDOREDUCTASE (EC 1.1.1.40) (MALIC ENZYME) (ME)       1983  0   154    591 KrPqglyiSlKeKgKvLdvlKNWPQksiqvIVvTDGerIlglGdlG
PSRC_WOLSU|P31077     POLYSULFIDE REDUCTASE CHAIN C (SULPHUR REDUCTASE CHAIN C      1982  0    56    317 agaLIaPLtIGAgLlLLiFdLtrPLhFWkllIFynfSsvMtlGvla
YPB4_CAEEL|Q11107     HYPOTHETICAL ZINC FINGER PROTEIN B03B8.4 IN CHROMOSOME I      1982  0   460   2111 KseFVePdeyTiRkKLLRwkhaKTkkEnRNItdSnEKeFsYepGeS
MAOC_LYCES|P37222     MALATE OXIDOREDUCTASE, CHLOROPLAST (EC 1.1.1.4 (FRAGMENT      1980  0   138    573 KrPqglffSlKeKgKihEvlKNWPekKiqvIVvTDGerIlglGdlG
MAOM_SOLTU|P37221     MALATE OXIDOREDUCTASE [NAD], MITOCHONDRIAL 62 KD ISOFORM      1979  0   161    626 rrPrgmyfSAedRgEmmsmvyNWPaDQvDmIVvTDGSrIlglGdlG
TYRA_HAEIN|P43902     CHORISMATE MUTASE (EC 5.4.99.5) (CM) / PREPHENATE DEHYDR      1979  0    64    377 KagisadLieDvlrRFmREsyaNenQFgFKtInSDihKIvIvGGYG
MAOM_AMAHP|P37224     MALATE OXIDOREDUCTASE [NAD], MITOCHONDRIAL 65 KD ISOFORM      1976  0   158    623 rrPrgmyfSsDdRgEmmsmvyNWPaEQvDmIVvTDGSrIlglGdlG
HOFB_HAEIN|P44622     PROTEIN TRANSPORT PROTEIN HOFB HOMOLOG | PS00662              1975  0   170    464 anRiISrLkllAKLdisEnRLpqDGRFqFKttFSDildFrLStlpT
MAOX_VITVI|P51615     MALATE OXIDOREDUCTASE (EC 1.1.1.40) (MALIC ENZYME) (ME)       1974  0   154    591 rrPqglyiSlKeKgKiLEvlKNWPeRriqvIVvTDGerIlglGdlG
TRA0_ECOLI|P15025     TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS21               1974  0    38    390 KyPEPPaRktrHKMvkLKpfMDyidmrlAenVWnsEviFaeikamG
TRA0_SHISO|P16944     TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS640              1974  0    38    315 KyPEPPaRktrHKMvkLKpfMDyidmrlAenVWnsEviFaeikamG
GYRB_ACIJO|Q44081     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1973  0    81    216 rLRELSfLNAGvRivWrdERiHaehvFdyegglSekSAlDIaGlpG
NRAM_INBHK|P16191     NEURAMINIDASE (EC 3.2.1.18)                                   1973  0   190    466 vgvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBBE|P27907     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   189    465 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBLN|P16193     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   189    465 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBMF|P16199     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   189    465 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBOR|P16201     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   190    466 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBSI|P16203     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   190    466 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBUS|P16205     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   190    466 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBVI|P16207     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   189    465 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
NRAM_INBYB|Q90021     NEURAMINIDASE (EC 3.2.1.18)                                   1972  0   190    466 igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc
YBDM_ECOLI|P77174     HYPOTHETICAL 23.9 KD PROTEIN IN CSTA-DSBG INTERGENIC REG      1972  0   135    209 qrIaATiRHnrARgRhqiTAMSeiVRElSqlgWdDnKigkelGmDS
YCF2_MARPO|P09975     HYPOTHETICAL 259 KD PROTEIN (ORF 2136)                        1970  0  1129   2136 KffLkSKKislKtLSFhnFkLKWnLRFfNeInykknyllNflwSDf
AST5_DROME|P10083     ACHAETE-SCUTE COMPLEX PROTEIN T5 (ACHAETE) | PS00038          1969  0    91    201 KVlhendqQKqKqLhLqqQHLHfqQQQqhqHLyawhqelQLQsPTG
EUTE_ECOLI|P77445     ETHANOLAMINE UTILIZATION PROTEIN EUTE                         1969  0   236    467 agnPPvvvdeTAdLARAaQsivKGaSFdNNIIcaDEKvlIVvdSva
GLO2_HUMAN|Q16775     HYDROXYACYLGLUTATHIONE HYDROLASE (EC 3.1.2.6) (GLYOXALAS      1969  0    34    260 KVvdAarKHgvKltTvLtTHhHWDhaggNekLvklESglkVyGGDd
TRFE_RABIT|P19134     SEROTRANSFERRIN PRECURSOR (SIDEROPHILIN) (BETA-1-METAL B      1968  0   595    694 KaPnhavvSRKdKaAcvKQkLldlQvEygNtVadcsSKFcMFhSkT
YNC4_YEAST|P53970     HYPOTHETICAL 27.7 KD PROTEIN IN UME3-HDA1 INTERGENIC REG      1968  0   191    246 inPPViLmayKKRrKadKhffNKikRNfDvleiTDfSKFehylker
KINN_HUMAN|Q12840     NEURONAL KINESIN HEAVY CHAIN (NKHC) | PS00411 | PS50067       1966  0   522   1032 vatmLSLeSelqRLQevsgHqRKriaEvlNgLmkDlSeFsViVGnG
CRTI_RHOCA|P17054     PHYTOENE DEHYDROGENASE (EC 1.3.-.-) (PHYTOENE DESATURASE      1964  0   277    524 vVsnAdagHtyKRLlRnRdRwRWTdEKlDKkrWSmGlfvwYFGTkG
GYRB_ACICA|Q43947     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1964  0    81    216 rLRELSfLNAGvRivLrdERiNlGhvFdyegglSekSAlDIaGlpG
PARF_PARTE|P47244     PARAFUSIN | PS00710                                           1964  0    30    582 qKPgtSgLrKKvseAtqpnYLeNfVQsiFNtLrkDElKnvLFVGgd
GYRB_ACIS1|Q44272     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1963  0    81    216 rLRELSLLNAGvRivLrdERiNaehvFdyegglSekSAlDIaGlpG
KINN_MOUSE|P28738     NEURONAL KINESIN HEAVY CHAIN (NKHC) | PS00411 | PS50067       1963  0   522   1027 vatmLSLeSelqRLQevsgHqRKriaEvlNgLmrDlSeFsViVGnG
PPS2_BACSU|P39846     PEPTIDE SYNTHETASE 2 | PS00012 | PS00455 | PS50075            1963  0  1586   2560 ErISfmLndsGAKLlLtErgLNKPaDytghILyiDEcenNsipaDv
CYRG_MOUSE|P34902     CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR (GAMMA-C       1962  0   170    369 ELRwkSrhiKercLQyLvQYrSNrdRsWtelIvnhEprFsLpsvDe
YOUG_BACLI|Q45292     HYPOTHETICAL 17.3 KD PROTEIN IN GNTR 5'REGION                 1961  0    98    147 KcREtPihpfIpnLSFiKnkrHWGySFrFgHIeisEhdFkLiVkqm
YENR_YEREN|P54295     YENR REGULATORY PROTEIN | PS00622                             1960  0    38    244 KTPLhPTiisnypLdWvKkYKKNsyhliDpVIlTakdKvapFawDd
YFJJ_ECOLI|P52125     HYPOTHETICAL 24.6 KD PROTEIN IN ALPA-GABD INTERGENIC REG      1960  0    82    208 rKdwPdsRHsTlRyAWvREYtKNrkRhyhlILcfnqdAyyhlGdYd
ITA2_HUMAN|P17301     PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (GPIA) (COLL      1959  0   809   1181 qeqPfivsNqnKRLTFsvTlKNKreSayNTgIvvDfSenlfFaSfS
LEF4_NPVAC|P41477     LATE EXPRESSION FACTOR 4                                      1959  0    98    464 KLPykTLsHnlsKiikvyvYqHdkiEikFeHVyfskSdIDLFdSTm
CP4C_BLADI|P29981     CYTOCHROME P450 4C1 (EC 1.14.14.1) (CYPIVC1) | PS00086        1958  0   272    511 EdeLLgKKkRlAfLdLLLEAseNGtkmsDTdIrEevdtFMfeGhDT
YDIL_ECOLI|P76196     HYPOTHETICAL 15.0 KD PROTEIN IN LPP-AROD INTERGENIC REGI      1958  0    57    127 EqlLAmrqQRKKhLhaiiEkiNNrigNntmrfFpDltAFQrvyPDG
DHA6_YEAST|P54115     ALDEHYDE DEHYDROGENASE, CYTOSOLIC (EC 1.2.1.3) | PS00070      1957  0   267    501 KKItLeLggKsAhLvFddAniKKTLpNlvNgIFknagqIcsSGSri
DPOM_CLAPU|P22373     PROBABLE DNA POLYMERASE (EC 2.7.7.7) | PS00116                1957  0   710   1063 KikSPdnLylGllpKRtETsLifPGgaWegwyFSeElKFaVahGYe
GYRB_ACIS6|Q44277     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1957  0    81    216 rLRELSfLNAGvRivLrdERVNlehiydyeVglSekSAlDIaGlpG
GYRB_ACIS9|Q44276     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1957  0    81    216 rLRELSfLNAGvRivLrdERVNlehiydyeVglSekSAlDIaGlpG
ITA2_BOVIN|P53710     PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (G (FRAGMENT      1957  0   798   1170 qqqPfivsNqnKRLTFsvQlKNKkeSayNTeIvvDfSenlfFaSwS
SIN3_YEAST|P22579     PAIRED AMPHIPATHIC HELIX PROTEIN                              1957  0   884   1536 EhPaVTapvvlKRLKqkdEewRraQREWNKVwrElEqKvffkslDh
THIS_ECOLI|O32583     THIS PROTEIN                                                  1957  0    18     66 helLeqLdQRqAgaALAinqqivPREQWAqHIvqDGdqIlLFqvia
MAOX_PHAVU|P12628     MALATE OXIDOREDUCTASE (EC 1.1.1.40) (MALIC ENZYME) (ME)       1956  0   152    589 rrPqglyiSlKeKgKiLEvlKNWPeksiqvIVvTDGerIlglGdlG
PH81_YEAST|P17442     PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO81 (CDK       1956  0   127   1178 KKfqkdLRNleqyVELnKTgfSKaLkKWDKrsqShdKdFyLatvvS
GSHC_SCHMA|Q00277     GLUTATHIONE PEROXIDASE (EC 1.11.1.9) (GPX) | PS00460 | P      1955  0    65    169 rilafPcnQfGgqepWAEAeiKKfVTEkygVqFdmfSKIkVnGSDa
NUCL_MOUSE|P09405     NUCLEOLIN (PROTEIN C23) | PS00030                             1955  0   381    706 pKgrdSKKvRaARtlLAKnlsfNitEDelKeVFEDameIrLvsqDG
RL17_SCHPO|O59794     60S RIBOSOMAL PROTEIN L17 | PS00464                           1955  0     5    187 aaPaLeTKcAKARgAyLRTHfKNsREvaFTIngmnlKKafIFldnv
MAOX_MESCR|P37223     MALATE OXIDOREDUCTASE (EC 1.1.1.40) (MALIC ENZYME) (ME)       1954  0   148    585 rrPqglfiSlKdKgRiLEllrNWPekKiqvIVvTDGerIlglGdlG
RPOC_TREPA|O83270     DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (EC 2.7.7.6) (TR      1953  0   565   1416 EiPFVneTldDKRiRkLiERVfKrQDsWlaVqmlDalKtIgytyaT
SN2L_CAEEL|P41877     POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L                 1953  0   142    971 asPhLvivpKsTlqnWAnEfKKWcPSinAvVLigDEAArNqvlrDv
YM8I_YEAST|Q03529     HYPOTHETICAL 44.9 KD PROTEIN IN URA10-NRC1 INTERGENIC RE      1953  0   330    384 hskLPPfmrKlKKyhLehhYKNyqLgFgvTswFwDEvfgtYlGPDa
EUTE_SALTY|P41793     ETHANOLAMINE UTILIZATION PROTEIN EUTE                         1951  0   236    467 agnPPvvvdeTAdLpRAaQsivKGaSFdNNIIcaDEKvlIVvdSva
GLND_MYCTU|Q10961     PROBABLE [PROTEIN-PII] URIDYLYLTRANSFERASE (EC 2.7.7.59)      1951  0    20    808 sgnhreLdpvGlRqTWLdlHeSWliDKaDeIgiaDaSgFaIvGvgG
HBB1_TRICR|P10785     HEMOGLOBIN BETA-1 CHAIN (MAJOR) | PS01033                     1951  0    63    145 aKvmhSiaeAvKhLddLKAYyadlsTihcKkLyvDpAnFkLFGGiv
MA2X_HUMAN|P49641     ALPHA-MANNOSIDASE IIX (EC 3.2.1.114) (MANNOSYL-OLIGOSACC      1951  0   195   1139 lnsmVSKLQeDpRrRFLwAeVSffakwWDNInvqkrAAvrrlVGnG
VIL1_MOUSE|Q62468     VILLIN                                                        1951  0   690    826 ETPiIvvKQgheppTFtgwfLaWDPfKWSNtksyDdlKaeLgnSgd
Y08F_MYCTU|Q11052     PROBABLE REGULATORY PROTEIN CY50.15 | PS50006                 1951  0   117    388 EKtagvhaaAagRfEqAsrHLSaaLREWRgpVldDlrdFQfvePfa
GYRB_ACIS8|Q44275     DNA GYRASE SUBUNIT B (EC 5.99.1.3) (FRAGMENTS) | PS00177      1950  0    81    216 rLRELSfLNAGvRivLcdERiNlehvFdyegglSekSAlDIaGlpG
PTP1_DROME|P35992     PROTEIN-TYROSINE PHOSPHATASE 10D PRECURSOR (EC 3.1.3.48)      1950  0  1273   1630 EfeELkhvgRDqpcTFAdlpcNrPknrftNILpyDhSrFkLQpvDd
RFAB_ECOLI|P27127     LIPOPOLYSACCHARIDE 1,6-GALACTOSYLTRANSFERASE (EC 2.4.1.-      1949  0   191    369 iyvgrmKfegqKRVKdLLdgLSqakgNWklHVlgDGSdFekcqaYG
YO96_CAEEL|P41846     HYPOTHETICAL 93.9 KD PROTEIN T20B12.6 IN CHROMOSOME III       1949  0   100    843 rKhtVPKetIesKLRsyEppVKlqRSQtpKHtiSDEfAwDfDdlDn
NOD1_RHIGA|P50331     NODULATION PROTEIN D I | PS00044                              1948  0   261    310 vehPLPPLHfplaVQWpalHntdPGniWmreImfDEAsrMeasSeT
