	Sample files for protomat (Block Maker)



S. Henikoff, J. G. Henikoff, W. J. Alford & S. Pietrokovski, "Automated 
construction and graphical presentation of protein blocks from unaligned 
sequences", Gene-COMBIS, Gene 163 (1995) GC 17-26. 


Protomat uses Ham Smith's "motif" algorithm as implemented in Block Maker:
http://blocks.fhcrc.org/blockmkr/make_blocks.html

protomat.csh runs the protomat system to construct blocks from an
input of of protein sequences in fasta format. Example is:
	protomat.csh lipo.pros

Compare results with files in distribution/

