#anosim
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
# testRarefied.dist is stability.opti_mcc.thetayc.0.03.lt.ave.dist from MiSeq_SOP
set.dir(input=./TestFiles, output=./anosim, tempdefault=./TestReferences)
set.logfile(name=anosim.logfile)
anosim(phylip=testRarefied.dist, design=mouse.time.design)
quit()

