#summary.seqs
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
# final.fasta, final.names, final.count from MISeq_SOP
set.dir(input=./TestFiles, output=./summary.seqs, tempdefault=./TestReferences)
set.logfile(name=summaryseqs.logfile)
summary.seqs(fasta=final.fasta)
summary.seqs(fasta=final.fasta, name=final.names)
summary.seqs(fasta=final.fasta, count=final.count_table)
quit()
