#make.file
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
set.dir(input=./TestFiles, output=./make.file, tempdefault=./TestReferences)
set.logfile(name=makefile.logfile)
make.file(inputdir=./TestFiles)
make.file(inputdir=./TestFiles, numcols=2)
make.file(inputdir=./TestFiles, type=gz)
make.file(inputdir=./TestFiles, prefix=myReallyAwesomeData)
make.file(inputdir=./TestFiles, type=gz, prefix=myReallyAwesomeData)
quit()
