#NEXUS
BEGIN TAXA;
    TITLE Untitled_TAXA_Block_1;
    DIMENSIONS NTax = 6;
    TAXLABELS P._fimbriata P._robusta P._americana P._myriophylla P._polygama P._macrophylla;
    blockid bogus;
END;
BEGIN CHARACTERS;
    TITLE dna_forty_five;
    LINK TAXA = Untitled_TAXA_Block_1;
    DIMENSIONS NChar=45;
    FORMAT Datatype=DNA  Gap=-;
    CHARLABELS labone labtwo labthree labfour labfive labsix labseven;
Matrix
P._fimbriata       RCCTCGGCTTAACGAACCTCGGCTTAACGAACCTCGGCTTAACGA
P._robusta         (AC)CCTCGGCTTAACCAACCTCGGCTTAACGAACCTCGGCTTAACGA
P._americana       RCGTCGCTTTCA---ACGTCGCTTTCACCAACGTCGCTTTCACCA
P._myriophylla     ACGTCGCTTTCA---ACGTCGCTTTCACCAACGTC?CTTTCACCA
P._polygama        ACGTCGCTCTCACCAACGTCGCTTTCACCAACGTC?CTTTCACCA
P._macrophylla     ACGTCGCTCTCACCAACGTCGCTTTCACCAACGTCGCTTTCACCA
;
END;
BEGIN TREES;
    TITLE Untitled_TREES_Block_1;
    LINK TAXA = Untitled_TAXA_Block_1;
    TRANSLATE
        1 P._fimbriata,
        2 P._robusta,
        3 P._americana,
        4 P._myriophylla,
        5 P._polygama,
        6 P._macrophylla;
    TREE treone = [&R](1,2,3,4,5,6);
    TREE tretwo = [&R](1,(2,3),4,5,6)[test];
    TREE trethr = [&R](1,2,(3,4),5,6);
END;
BEGIN SETS;
    LINK TAXA = Untitled_TAXA_Block_1 CHARACTERS = dna_forty_five TREES = Untitled_TREES_Block_1;
    CHARSET csone = 1-3;
    TaxPartition cspart = firstthree : 1-3, next : 4, anothergr : 6, rest : 5;
    CharPartition cspart = firstthree : 1-3, next : 4-14 \ 2, anothergr : 5-45 \ 2, rest : 16-44 \ 2;
    CharPartition csparttwo = firstthree : 1-3, next : 4-12 \ 2, anothergr : 5-45 \ 2, rest : 14-44 \ 2;
    TreePartition cspart = next : 3, firstthree : 1 2;
END;
BEGIN ASSUMPTIONS;
    LINK CHARACTERS = dna_forty_five;
    EXSET e = 3-43 \ 4;
    EXSET * edef = 2-42 \ 4;
    UserType MINE (Stepmatrix) = 4
       A   C   G   T
       .   1   1   1
       2   .   2   2
       3   3   .   3
       4   4   4   .;
    WtSet TES = '2' : 1-3 5-13 \ 2, '6.01' : 4-44 \ 2, '3' : 15-45 \ 2;
    WtSet T = '2' : 1-3 5-13 \ 2, '1' : 4-44 \ 2, '3' : 15-45 \ 2;
    WtSet * TVECS = '1' : 1-13 \ 3 19-43 \ 3, '11' : 16, '2' : 2-17 \ 3 23-44 \ 3, '21' : 20, '3' : 3-30 \ 3 36-45 \ 3, '31' : 33;
    TypeSet * TS = ORD : 1-3 5-13 \ 2, UNORD : 4-44 \ 2, mine : 15-45 \ 2;
END;
