#nexus

begin taxa;
  dimensions ntax=6;
  taxlabels
	'P. fimbriata'
	'P. robusta'
	'P. americana'
	'P. myriophylla'
	'P. polygama'
	'P. macrophylla'
  ;
end;
begin characters;
   dimensions nchar= 90;
   format datatype=protein missing=? gap=- matchchar=.  interleave=yes;
   MATRIX  
	P._fimbriata    {a, G}Rctcggcttaacgaacctcggcttaacgaacctcggcttaacga
	P._robusta      (a, , C)cctcggcttaaccaacctcggcttaacgaacctcggcttaacga
	P._americana    ACDEFGHIKLMNPQRSTVWY*BZAAAAAAAAAAtcgctttcacca
	P._myriophylla  acgtcgctttca---acgtcgctttcaccaacgtc?ctttca.ca
	P._polygama     a.gtcgctctcaccaacgtcgctttcaccaacgtc?ctttcacca
	P._macrophylla  acgtcgctctcaccaacgtcgctttcaccaacgtcgctttcacca

	P._fimbriata    Rcctcggcttaacgaacctcggcttaacgaacctcggcttaacga
	P._robusta      (a, , C)cctcggcttaaccaacctcggcttaacgaacctcggcttaacga
	P._americana    rcgtcgctttca---acgtcgctttcaccaacgtcgctttcacca
	P._myriophylla  acgtcgctttca---acgtcgct.tcaccaacgtc?ctttcacca
	P._polygama     acgtcgctctcaccaacgtcgctttcaccaacgtc?ctttcacca
	P._macrophylla  acgtcgctctcaccaacgtcgct..caccaacgtcgctttcacca
  ;
end;
